Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.48□□□□□ -1.85
USP28Q96RU2 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP28Q96RU2 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP28Q96RU2 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP28Q96RU2 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.47□□□□□ -1.85
USP28Q96RU2 CDR1-202ENST00000625883 1485 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USP28Q96RU2 SNRPEP3-201ENST00000338402 276 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 Y_RNA.25-201ENST00000362528 102 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.47□□□□□ -1.85
USP28Q96RU2 RPS3AP9-201ENST00000417027 792 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.47□□□□□ -1.85
USP28Q96RU2 MTND4P20-201ENST00000424125 869 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.47□□□□□ -1.85
USP28Q96RU2 VN1R108P-201ENST00000431580 830 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.47□□□□□ -1.85
USP28Q96RU2 AC241584.1-201ENST00000438469 1241 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 MTND2P4-201ENST00000445034 1004 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.47□□□□□ -1.85
USP28Q96RU2 SSXP4-201ENST00000451349 245 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 RPS24P6-201ENST00000452670 400 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 RPL18AP17-201ENST00000455326 198 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.47□□□□□ -1.85
USP28Q96RU2 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.47□□□□□ -1.85
USP28Q96RU2 AC010285.1-201ENST00000470580 392 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.47□□□□□ -1.85
USP28Q96RU2 RN7SL633P-201ENST00000488974 297 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
USP28Q96RU2 MTCO3P28-201ENST00000513351 515 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 OR5AK1P-201ENST00000524837 922 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.47□□□□□ -1.85
USP28Q96RU2 AL512347.1-201ENST00000566420 503 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AC002400.1-201ENST00000569310 726 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.47□□□□□ -1.85
USP28Q96RU2 ISCA1P3-201ENST00000577104 373 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 MIR5680-201ENST00000577577 84 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.47□□□□□ -1.85
USP28Q96RU2 AC040904.1-201ENST00000590850 223 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AC069304.2-201ENST00000605154 435 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 OR2AS2P-201ENST00000606902 342 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AC092650.2-201ENST00000619984 902 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AC007494.3-201ENST00000624660 743 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 AC091965.5-201ENST00000624785 342 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.47□□□□□ -1.85
USP28Q96RU2 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.47□□□□□ -1.85
USP28Q96RU2 AC087359.1-201ENST00000508335 1740 ntBASIC3.47□□□□□ -1.85
USP28Q96RU2 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
USP28Q96RU2 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.46□□□□□ -1.86
USP28Q96RU2 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
USP28Q96RU2 RNU6-216P-201ENST00000363282 104 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 DEFB109C-201ENST00000382575 264 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 DEFB109B-201ENST00000382656 264 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 SNORA54-201ENST00000384281 123 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 RNU6-1226P-201ENST00000384317 107 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 Y_RNA.493-201ENST00000384422 102 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 Y_RNA.560-201ENST00000384689 102 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 MIR649-201ENST00000384843 97 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 RPL7P25-201ENST00000404151 721 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.46□□□□□ -1.86
USP28Q96RU2 RNU2-28P-201ENST00000410457 189 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 RNA5SP274-201ENST00000410484 108 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 RNU4-47P-201ENST00000410876 114 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AC016907.1-201ENST00000419483 435 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.46□□□□□ -1.86
USP28Q96RU2 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.46□□□□□ -1.86
USP28Q96RU2 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.46□□□□□ -1.86
USP28Q96RU2 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.46□□□□□ -1.86
USP28Q96RU2 TRGVB-201ENST00000453257 471 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.46□□□□□ -1.86
USP28Q96RU2 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.46□□□□□ -1.86
USP28Q96RU2 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AP004217.1-201ENST00000480579 346 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 RN7SL283P-201ENST00000489055 303 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 HMGB1P22-201ENST00000505315 124 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 AC093281.2-201ENST00000510153 597 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 AC010265.1-201ENST00000513509 211 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 RNA5SP468-201ENST00000516782 93 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AC125611.1-201ENST00000549563 229 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.46□□□□□ -1.86
USP28Q96RU2 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.46□□□□□ -1.86
USP28Q96RU2 LARP7P2-201ENST00000575306 125 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 MIR3915-201ENST00000578518 97 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.46□□□□□ -1.86
USP28Q96RU2 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.46□□□□□ -1.86
USP28Q96RU2 AC004223.4-201ENST00000612426 332 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.46□□□□□ -1.86
USP28Q96RU2 AF246928.1-201ENST00000623768 87 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms