Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.39□□□□□ -1.71
COL3A1P02461 MIR5680-201ENST00000577577 84 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.39□□□□□ -1.71
COL3A1P02461 AC017071.1-201ENST00000564407 2204 ntBASIC4.39□□□□□ -1.71
COL3A1P02461 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL3A1P02461 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL3A1P02461 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
COL3A1P02461 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
COL3A1P02461 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.39□□□□□ -1.71
COL3A1P02461 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
COL3A1P02461 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL3A1P02461 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL3A1P02461 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC4.38□□□□□ -1.71
COL3A1P02461 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL3A1P02461 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL3A1P02461 RNU6-660P-201ENST00000364566 109 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 RNU6-621P-201ENST00000364752 109 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
COL3A1P02461 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL3A1P02461 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
COL3A1P02461 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC4.38□□□□□ -1.71
COL3A1P02461 RPL7P44-201ENST00000424827 742 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 AC007742.1-201ENST00000425789 329 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.38□□□□□ -1.71
COL3A1P02461 ZYG11AP1-201ENST00000430329 837 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 ELOCP26-201ENST00000436067 329 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.38□□□□□ -1.71
COL3A1P02461 ARPC3P1-201ENST00000437218 533 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.38□□□□□ -1.71
COL3A1P02461 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.38□□□□□ -1.71
COL3A1P02461 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.38□□□□□ -1.71
COL3A1P02461 RNU6-1153P-201ENST00000516760 105 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 OR5AK1P-201ENST00000524837 922 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 OR5AQ1P-201ENST00000527596 927 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC4.38□□□□□ -1.71
COL3A1P02461 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.38□□□□□ -1.71
COL3A1P02461 AC008536.2-201ENST00000607284 349 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 AP005137.2-201ENST00000609238 400 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 AC011472.4-201ENST00000615848 491 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 CR392039.4-201ENST00000624968 501 ntBASIC4.38□□□□□ -1.71
COL3A1P02461 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL3A1P02461 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL3A1P02461 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.38□□□□□ -1.71
COL3A1P02461 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
COL3A1P02461 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
COL3A1P02461 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL3A1P02461 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL3A1P02461 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
COL3A1P02461 RNU6-374P-201ENST00000364146 108 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 Y_RNA.263-201ENST00000364659 114 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AL122016.1-201ENST00000403365 367 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 RNA5SP31-201ENST00000411144 127 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 RPL17P12-201ENST00000413391 526 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 OR1AA1P-201ENST00000419597 916 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AC012065.2-201ENST00000421295 375 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL3A1P02461 AL365184.2-201ENST00000431139 435 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AC236972.1-201ENST00000433225 199 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AL450263.2-201ENST00000439400 589 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 ARL5AP2-201ENST00000444698 533 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.37□□□□□ -1.71
COL3A1P02461 AC013828.1-201ENST00000481845 158 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 RN7SL504P-201ENST00000494496 287 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.37□□□□□ -1.71
COL3A1P02461 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.37□□□□□ -1.71
COL3A1P02461 MIR2114-201ENST00000516645 80 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 SNORA70.19-201ENST00000516717 90 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 MIR4666A-201ENST00000580160 79 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AL390838.2-201ENST00000602394 274 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 DUXAP4-201ENST00000603046 613 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 AL034351.1-201ENST00000605288 668 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 RMST_8.1-201ENST00000610287 165 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 RNVU1-4-201ENST00000612985 164 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
COL3A1P02461 AC006026.1-201ENST00000444025 1803 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL3A1P02461 Z99496.1-201ENST00000469424 1477 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
COL3A1P02461 AL022578.1-201ENST00000439330 1433 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
COL3A1P02461 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL3A1P02461 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL3A1P02461 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.37□□□□□ -1.71
COL3A1P02461 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.37□□□□□ -1.71
COL3A1P02461 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL3A1P02461 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL3A1P02461 Y_RNA.509-201ENST00000384506 99 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL3A1P02461 AL590004.1-201ENST00000405321 300 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.37□□□□□ -1.71
COL3A1P02461 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.37□□□□□ -1.71
COL3A1P02461 RPL21P111-201ENST00000418453 477 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.37□□□□□ -1.71
COL3A1P02461 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC4.37□□□□□ -1.71
COL3A1P02461 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.37□□□□□ -1.71
COL3A1P02461 AL513174.1-201ENST00000423182 629 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 RPL31P54-201ENST00000429803 370 ntBASIC4.37□□□□□ -1.71
COL3A1P02461 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms