Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU1-132P-201ENST00000364300 164 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 MIR548F1-201ENST00000408667 84 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 PIGFP2-201ENST00000421400 651 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 PSMA2P3-201ENST00000429685 675 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 NPM1P49-201ENST00000448027 714 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 RPL29P29-201ENST00000448725 423 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC079448.1-201ENST00000449377 373 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 RPS20P32-201ENST00000456044 356 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC099563.1-201ENST00000456086 418 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AL359385.1-201ENST00000456509 365 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 snoU13.3-201ENST00000459441 104 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 RPS4XP10-201ENST00000465034 731 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC146507.1-201ENST00000468335 354 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 RPL21P103-201ENST00000479921 488 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC041039.1-201ENST00000485656 536 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 RPS26P15-201ENST00000488067 348 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 RNU6-1178P-201ENST00000516674 107 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 DEFB108A-201ENST00000530110 222 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AL391840.1-201ENST00000571144 367 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 MIR4644-201ENST00000579929 84 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AL354984.3-201ENST00000604803 325 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AF250324.2-201ENST00000608299 610 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AL592295.2-201ENST00000612578 206 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 uc_338.13-201ENST00000618243 179 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC007546.1-201ENST00000619452 559 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 SEPT14P19-203ENST00000633205 211 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 AC018555.1-201ENST00000567548 1980 ntBASIC4.05□□□□□ -1.76
VPS4AQ9UN37 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
VPS4AQ9UN37 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 NOL8P1-201ENST00000508336 3529 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 Z82217.1-201ENST00000625157 8149 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 U3.20-201ENST00000390909 217 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 GSTA9P-201ENST00000406231 611 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 MIR1179-201ENST00000408703 91 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC245052.5-201ENST00000416320 649 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 USP9YP18-201ENST00000425912 695 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 UBE2V1P8-201ENST00000437166 265 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 RPL23AP89-201ENST00000439324 255 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 RPL23AP33-201ENST00000442301 452 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AL590399.6-201ENST00000446396 307 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AL162151.2-201ENST00000448875 158 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC006517.1-201ENST00000480485 328 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC055855.1-201ENST00000489563 579 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 HMGB1P29-201ENST00000505659 499 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 HMGB1P50-201ENST00000605814 607 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AL391813.2-201ENST00000609113 322 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC002550.2-201ENST00000621246 394 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 AC079597.1-201ENST00000624306 508 ntBASIC4.04□□□□□ -1.76
VPS4AQ9UN37 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS4AQ9UN37 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC011460.1-201ENST00000636268 1834 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 RNU6-97P-201ENST00000363387 104 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms