Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.22□□□□□ -1.57
LIG3P49916 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.22□□□□□ -1.57
LIG3P49916 RPL7AP6-201ENST00000477943 801 ntBASIC5.22□□□□□ -1.57
LIG3P49916 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC5.22□□□□□ -1.57
LIG3P49916 RN7SL814P-201ENST00000487715 300 ntBASIC5.22□□□□□ -1.57
LIG3P49916 HMGB3P15-201ENST00000507326 574 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AC098591.2-201ENST00000510152 315 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC5.22□□□□□ -1.57
LIG3P49916 AC006427.1-201ENST00000514359 712 ntBASIC5.22□□□□□ -1.57
LIG3P49916 RN7SKP66-201ENST00000516681 231 ntBASIC5.22□□□□□ -1.57
LIG3P49916 RNU6-1088P-201ENST00000516850 104 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.22□□□□□ -1.57
LIG3P49916 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC5.22□□□□□ -1.57
LIG3P49916 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.22□□□□□ -1.57
LIG3P49916 AC008814.1-201ENST00000603797 406 ntBASIC5.22□□□□□ -1.57
LIG3P49916 AL627309.6-201ENST00000606857 840 ntBASIC5.22□□□□□ -1.57
LIG3P49916 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIG3P49916 AL589994.2-201ENST00000621124 579 ntBASIC5.22□□□□□ -1.57
LIG3P49916 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.22□□□□□ -1.57
LIG3P49916 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.22□□□□□ -1.57
LIG3P49916 AC090971.4-201ENST00000560291 1800 ntBASIC5.22□□□□□ -1.57
LIG3P49916 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIG3P49916 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.22□□□□□ -1.57
LIG3P49916 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
LIG3P49916 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
LIG3P49916 EIF2AP4-201ENST00000424793 1781 ntBASIC5.21□□□□□ -1.57
LIG3P49916 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
LIG3P49916 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
LIG3P49916 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
LIG3P49916 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
LIG3P49916 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
LIG3P49916 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.57
LIG3P49916 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIG3P49916 FAM91A3P-201ENST00000456826 2544 ntBASIC5.21□□□□□ -1.58
LIG3P49916 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIG3P49916 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIG3P49916 RNU6-474P-201ENST00000384243 107 ntBASIC5.21□□□□□ -1.58
LIG3P49916 SNORA75.4-201ENST00000391278 119 ntBASIC5.21□□□□□ -1.58
LIG3P49916 EIF4E2P1-201ENST00000393781 255 ntBASIC5.21□□□□□ -1.58
LIG3P49916 MIR1182-201ENST00000408363 97 ntBASIC5.21□□□□□ -1.58
LIG3P49916 RPL37P10-201ENST00000412884 288 ntBASIC5.21□□□□□ -1.58
LIG3P49916 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.21□□□□□ -1.58
LIG3P49916 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.21□□□□□ -1.58
LIG3P49916 AL139396.1-201ENST00000421137 167 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AL360081.1-201ENST00000428299 555 ntBASIC5.21□□□□□ -1.58
LIG3P49916 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG3P49916 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIG3P49916 GAPDHP58-201ENST00000438477 1006 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AL591623.2-201ENST00000449978 222 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AC092647.2-201ENST00000452998 253 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AC090096.1-201ENST00000489168 390 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.21□□□□□ -1.58
LIG3P49916 NDUFB5P1-201ENST00000508134 564 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AC005741.1-201ENST00000511094 432 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AC090136.1-201ENST00000520009 240 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AC022882.1-201ENST00000532142 501 ntBASIC5.21□□□□□ -1.58
LIG3P49916 ELOCP31-201ENST00000540463 467 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIG3P49916 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.21□□□□□ -1.58
LIG3P49916 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.21□□□□□ -1.58
LIG3P49916 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.21□□□□□ -1.58
LIG3P49916 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.21□□□□□ -1.58
LIG3P49916 AC012182.1-201ENST00000570133 895 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC5.21□□□□□ -1.58
LIG3P49916 SNRPGP17-201ENST00000603780 214 ntBASIC5.21□□□□□ -1.58
LIG3P49916 DPPA3P3-201ENST00000603842 430 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AL034351.1-201ENST00000605288 668 ntBASIC5.21□□□□□ -1.58
LIG3P49916 AL359757.2-201ENST00000624309 274 ntBASIC5.21□□□□□ -1.58
LIG3P49916 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
LIG3P49916 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIG3P49916 AL450326.2-201ENST00000421913 1962 ntBASIC5.21□□□□□ -1.58
LIG3P49916 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIG3P49916 AL137003.2-201ENST00000606924 2538 ntBASIC5.21□□□□□ -1.58
LIG3P49916 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG3P49916 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
LIG3P49916 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG3P49916 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
LIG3P49916 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.2□□□□□ -1.58
LIG3P49916 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIG3P49916 AC090229.1-201ENST00000590983 1609 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AC023421.1-201ENST00000590535 1785 ntBASIC5.2□□□□□ -1.58
LIG3P49916 RNU6-1252P-201ENST00000363054 104 ntBASIC5.2□□□□□ -1.58
LIG3P49916 RN7SKP44-201ENST00000363602 316 ntBASIC5.2□□□□□ -1.58
LIG3P49916 Y_RNA.202-201ENST00000364083 110 ntBASIC5.2□□□□□ -1.58
LIG3P49916 RNU6-946P-201ENST00000383878 107 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AL645927.1-201ENST00000396783 406 ntBASIC5.2□□□□□ -1.58
LIG3P49916 MTCYBP4-201ENST00000401524 249 ntBASIC5.2□□□□□ -1.58
LIG3P49916 RN7SKP158-201ENST00000410453 326 ntBASIC5.2□□□□□ -1.58
LIG3P49916 RNU4-14P-201ENST00000410858 122 ntBASIC5.2□□□□□ -1.58
LIG3P49916 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG3P49916 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.2□□□□□ -1.58
LIG3P49916 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG3P49916 RPL21P112-201ENST00000434403 463 ntBASIC5.2□□□□□ -1.58
LIG3P49916 AL161722.2-201ENST00000434731 981 ntBASIC5.2□□□□□ -1.58
LIG3P49916 CEACAMP7-201ENST00000444105 496 ntBASIC5.2□□□□□ -1.58
LIG3P49916 MRPL48P1-201ENST00000445390 636 ntBASIC5.2□□□□□ -1.58
LIG3P49916 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC5.2□□□□□ -1.58
LIG3P49916 DEFB109F-201ENST00000491870 277 ntBASIC5.2□□□□□ -1.58
LIG3P49916 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 214.3 ms