Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.1■□□□□ 0.97
NOD1Q9Y239 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
NOD1Q9Y239 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NOD1Q9Y239 AP005212.1-201ENST00000581547 1997 ntBASIC21.09■□□□□ 0.97
NOD1Q9Y239 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NOD1Q9Y239 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NOD1Q9Y239 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NOD1Q9Y239 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.09■□□□□ 0.97
NOD1Q9Y239 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.09■□□□□ 0.97
NOD1Q9Y239 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.09■□□□□ 0.97
NOD1Q9Y239 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.09■□□□□ 0.97
NOD1Q9Y239 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.09■□□□□ 0.97
NOD1Q9Y239 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.09■□□□□ 0.97
NOD1Q9Y239 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.09■□□□□ 0.97
NOD1Q9Y239 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NOD1Q9Y239 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
NOD1Q9Y239 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
NOD1Q9Y239 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NOD1Q9Y239 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
NOD1Q9Y239 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
NOD1Q9Y239 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.08■□□□□ 0.97
NOD1Q9Y239 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NOD1Q9Y239 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NOD1Q9Y239 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NOD1Q9Y239 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NOD1Q9Y239 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NOD1Q9Y239 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.08■□□□□ 0.97
NOD1Q9Y239 SPDYE15P-201ENST00000424157 909 ntBASIC21.08■□□□□ 0.97
NOD1Q9Y239 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.08■□□□□ 0.97
NOD1Q9Y239 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.08■□□□□ 0.97
NOD1Q9Y239 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.08■□□□□ 0.97
NOD1Q9Y239 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NOD1Q9Y239 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
NOD1Q9Y239 AL691432.3-201ENST00000621860 400 ntBASIC21.08■□□□□ 0.97
NOD1Q9Y239 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
NOD1Q9Y239 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.96
NOD1Q9Y239 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.08■□□□□ 0.96
NOD1Q9Y239 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NOD1Q9Y239 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NOD1Q9Y239 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NOD1Q9Y239 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
NOD1Q9Y239 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.08■□□□□ 0.96
NOD1Q9Y239 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.07■□□□□ 0.96
NOD1Q9Y239 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NOD1Q9Y239 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NOD1Q9Y239 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NOD1Q9Y239 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NOD1Q9Y239 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NOD1Q9Y239 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NOD1Q9Y239 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NOD1Q9Y239 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.07■□□□□ 0.96
NOD1Q9Y239 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.07■□□□□ 0.96
NOD1Q9Y239 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.07■□□□□ 0.96
NOD1Q9Y239 MIR4674-201ENST00000582457 87 ntBASIC21.07■□□□□ 0.96
NOD1Q9Y239 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
NOD1Q9Y239 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
NOD1Q9Y239 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NOD1Q9Y239 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.07■□□□□ 0.96
NOD1Q9Y239 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NOD1Q9Y239 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.06■□□□□ 0.96
NOD1Q9Y239 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
NOD1Q9Y239 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 HYMAI.1-201ENST00000620949 238 ntBASIC21.06■□□□□ 0.96
NOD1Q9Y239 CR769767.2-201ENST00000622735 460 ntBASIC21.06■□□□□ 0.96
NOD1Q9Y239 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
NOD1Q9Y239 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
NOD1Q9Y239 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
NOD1Q9Y239 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 8.1 ms