Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 AC120498.9-201ENST00000339021 3867 ntBASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
AP4E1Q9UPM8 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 FP475955.4-201ENST00000623131 1990 ntBASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 TSPY23P-201ENST00000440136 739 ntBASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 AL031985.4-201ENST00000642138 673 ntBASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.86■□□□□ 0.77
AP4E1Q9UPM8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 FAM197Y1-201ENST00000421178 764 ntBASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 AC026271.3-201ENST00000571884 352 ntBASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 RCC2P6-201ENST00000526625 1557 ntBASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.85■□□□□ 0.77
AP4E1Q9UPM8 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms