Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMA1Q9UHB6 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 BICD1-207ENST00000551848 1962 ntBASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 AL390961.4-201ENST00000623958 2535 ntBASIC20.93■□□□□ 0.94
LIMA1Q9UHB6 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 TSPY21P-201ENST00000433481 731 ntBASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMA1Q9UHB6 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 UNC93B4-201ENST00000505679 747 ntBASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMA1Q9UHB6 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LIMA1Q9UHB6 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms