Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIMD1Q9UGP4 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 MIR3652-201ENST00000579335 131 ntBASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 RN7SL510P-201ENST00000581311 263 ntBASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 SMG8-203ENST00000578922 2178 ntBASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIMD1Q9UGP4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 NEK4P2-201ENST00000580004 1012 ntBASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 NPAP1P7-201ENST00000613027 823 ntBASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMD1Q9UGP4 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 KRT8P41-201ENST00000533985 1514 ntBASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 PRELID1P1-202ENST00000567272 903 ntBASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
LIMD1Q9UGP4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 AC092667.1-201ENST00000434301 2586 ntBASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms