Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.15■□□□□ 0.5
SCN3AQ9NY46 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.15■□□□□ 0.5
SCN3AQ9NY46 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.15■□□□□ 0.5
SCN3AQ9NY46 AC073912.3-201ENST00000624414 853 ntBASIC18.15■□□□□ 0.5
SCN3AQ9NY46 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.15■□□□□ 0.5
SCN3AQ9NY46 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SCN3AQ9NY46 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SCN3AQ9NY46 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SCN3AQ9NY46 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SCN3AQ9NY46 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
SCN3AQ9NY46 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
SCN3AQ9NY46 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
SCN3AQ9NY46 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 SLC25A1P4-201ENST00000567977 778 ntBASIC18.14■□□□□ 0.49
SCN3AQ9NY46 DGCR10-201ENST00000609839 495 ntBASIC18.14■□□□□ 0.49
SCN3AQ9NY46 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SCN3AQ9NY46 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 AC087499.1-201ENST00000418141 1075 ntBASIC18.13■□□□□ 0.49
SCN3AQ9NY46 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 CRYGFP-201ENST00000418459 633 ntBASIC18.13■□□□□ 0.49
SCN3AQ9NY46 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 AP000525.1-201ENST00000608286 694 ntBASIC18.13■□□□□ 0.49
SCN3AQ9NY46 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SCN3AQ9NY46 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.12■□□□□ 0.49
SCN3AQ9NY46 AC096733.2-201ENST00000609937 1394 ntBASIC18.12■□□□□ 0.49
SCN3AQ9NY46 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SCN3AQ9NY46 AC087289.5-201ENST00000586076 3175 ntBASIC18.12■□□□□ 0.49
SCN3AQ9NY46 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.12■□□□□ 0.49
SCN3AQ9NY46 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 MIR1238-201ENST00000408483 83 ntBASIC18.11■□□□□ 0.49
SCN3AQ9NY46 ECEL1P3-201ENST00000427961 737 ntBASIC18.11■□□□□ 0.49
SCN3AQ9NY46 MFAP1P1-201ENST00000442257 1255 ntBASIC18.11■□□□□ 0.49
SCN3AQ9NY46 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.11■□□□□ 0.49
SCN3AQ9NY46 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 FP475955.4-201ENST00000623131 1990 ntBASIC18.11■□□□□ 0.49
SCN3AQ9NY46 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN3AQ9NY46 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms