Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 KRT17P1-201ENST00000399211 1546 ntBASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP1AQ9HD42 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 AC005181.1-201ENST00000604782 1256 ntBASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHMP1AQ9HD42 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 LTB4R2-202ENST00000528054 3092 ntBASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 FZD10-202ENST00000539839 3282 ntBASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 AC093787.1-201ENST00000450396 207 ntBASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP1AQ9HD42 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.46■□□□□ 0.22
CHMP1AQ9HD42 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
CHMP1AQ9HD42 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.46■□□□□ 0.22
CHMP1AQ9HD42 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 RARRES2P6-201ENST00000567333 442 ntBASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 AC018553.1-201ENST00000616682 1458 ntBASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP1AQ9HD42 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms