Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 MIR1238-201ENST00000408483 83 ntBASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 FITM1-202ENST00000559294 800 ntBASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM39Q9HCM9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 SLC25A1P4-201ENST00000567977 778 ntBASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM39Q9HCM9 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 CRYGFP-201ENST00000418459 633 ntBASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 AP005242.2-201ENST00000580065 1175 ntBASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM39Q9HCM9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 AC096733.2-201ENST00000609937 1394 ntBASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 Z82202.1-201ENST00000623446 1880 ntBASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms