Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.76■□□□□ 0.27
COL12A1Q99715 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.76■□□□□ 0.27
COL12A1Q99715 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.76■□□□□ 0.27
COL12A1Q99715 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.76■□□□□ 0.27
COL12A1Q99715 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.75■□□□□ 0.27
COL12A1Q99715 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL12A1Q99715 TMEM179-206ENST00000616017 1645 ntBASIC16.75■□□□□ 0.27
COL12A1Q99715 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
COL12A1Q99715 AC036111.1-201ENST00000533973 1582 ntBASIC16.75■□□□□ 0.27
COL12A1Q99715 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.75■□□□□ 0.27
COL12A1Q99715 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.75■□□□□ 0.27
COL12A1Q99715 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.75■□□□□ 0.27
COL12A1Q99715 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.75■□□□□ 0.27
COL12A1Q99715 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL12A1Q99715 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
COL12A1Q99715 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL12A1Q99715 IGHV3-22-201ENST00000520721 359 ntBASIC16.74■□□□□ 0.27
COL12A1Q99715 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
COL12A1Q99715 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.74■□□□□ 0.27
COL12A1Q99715 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL12A1Q99715 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.74■□□□□ 0.27
COL12A1Q99715 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.74■□□□□ 0.27
COL12A1Q99715 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.74■□□□□ 0.27
COL12A1Q99715 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.74■□□□□ 0.27
COL12A1Q99715 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
COL12A1Q99715 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL12A1Q99715 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.74■□□□□ 0.27
COL12A1Q99715 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL12A1Q99715 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL12A1Q99715 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
COL12A1Q99715 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.74■□□□□ 0.27
COL12A1Q99715 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
COL12A1Q99715 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.74■□□□□ 0.27
COL12A1Q99715 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.74■□□□□ 0.27
COL12A1Q99715 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL12A1Q99715 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
COL12A1Q99715 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.74■□□□□ 0.27
COL12A1Q99715 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL12A1Q99715 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL12A1Q99715 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
COL12A1Q99715 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.73■□□□□ 0.27
COL12A1Q99715 LINC01711-201ENST00000598340 967 ntBASIC16.73■□□□□ 0.27
COL12A1Q99715 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 AC233702.3-201ENST00000578656 1387 ntBASIC16.73■□□□□ 0.27
COL12A1Q99715 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL12A1Q99715 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
COL12A1Q99715 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.73■□□□□ 0.27
COL12A1Q99715 CYMP-203ENST00000474680 1263 ntBASIC16.73■□□□□ 0.27
COL12A1Q99715 RFPL4AP1-201ENST00000530883 850 ntBASIC16.73■□□□□ 0.27
COL12A1Q99715 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL12A1Q99715 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.73■□□□□ 0.27
COL12A1Q99715 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL12A1Q99715 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.73■□□□□ 0.27
COL12A1Q99715 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC16.73■□□□□ 0.27
COL12A1Q99715 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC16.73■□□□□ 0.27
COL12A1Q99715 Z98882.1-201ENST00000622160 2253 ntBASIC16.73■□□□□ 0.27
COL12A1Q99715 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 GPX1P2-201ENST00000429271 606 ntBASIC16.73■□□□□ 0.27
COL12A1Q99715 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL12A1Q99715 MIR4674-201ENST00000582457 87 ntBASIC16.73■□□□□ 0.27
COL12A1Q99715 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.73■□□□□ 0.27
COL12A1Q99715 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL12A1Q99715 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL12A1Q99715 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL12A1Q99715 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL12A1Q99715 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL12A1Q99715 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms