Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC42Q96M95 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC42Q96M95 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CCDC42Q96M95 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC42Q96M95 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC42Q96M95 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC42Q96M95 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 AL512353.2-201ENST00000448759 1962 ntBASIC20.65■□□□□ 0.9
CCDC42Q96M95 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.65■□□□□ 0.9
CCDC42Q96M95 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 AC090340.1-201ENST00000620778 4980 ntBASIC20.65■□□□□ 0.9
CCDC42Q96M95 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC42Q96M95 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC42Q96M95 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC42Q96M95 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC42Q96M95 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
CCDC42Q96M95 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.64■□□□□ 0.9
CCDC42Q96M95 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC42Q96M95 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC42Q96M95 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC42Q96M95 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC42Q96M95 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC42Q96M95 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC42Q96M95 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC42Q96M95 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC42Q96M95 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC42Q96M95 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC42Q96M95 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.64■□□□□ 0.89
CCDC42Q96M95 AC092118.2-201ENST00000613495 667 ntBASIC20.64■□□□□ 0.89
CCDC42Q96M95 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.64■□□□□ 0.89
CCDC42Q96M95 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC42Q96M95 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC42Q96M95 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC42Q96M95 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC42Q96M95 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC42Q96M95 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC42Q96M95 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC42Q96M95 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCDC42Q96M95 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC42Q96M95 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC42Q96M95 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 CROCCP5-201ENST00000436658 830 ntBASIC20.63■□□□□ 0.89
CCDC42Q96M95 AC091874.3-201ENST00000512672 1195 ntBASIC20.63■□□□□ 0.89
CCDC42Q96M95 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC42Q96M95 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC42Q96M95 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC42Q96M95 IKBKGP1-201ENST00000612193 1073 ntBASIC20.63■□□□□ 0.89
CCDC42Q96M95 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 FEM1AP3-201ENST00000403722 1741 ntBASIC20.63■□□□□ 0.89
CCDC42Q96M95 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC42Q96M95 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CCDC42Q96M95 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC42Q96M95 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 AC079598.2-202ENST00000546624 1451 ntBASIC20.62■□□□□ 0.89
CCDC42Q96M95 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC42Q96M95 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC42Q96M95 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms