Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 DET1-207ENST00000564406 2315 ntTSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 MED25-212ENST00000618715 1467 ntTSL 5 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 SAPCD2P2-201ENST00000431719 1174 ntBASIC5.9□□□□□ -1.46
SYNE1Q8NF91 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 AC026271.3-201ENST00000571884 352 ntBASIC5.9□□□□□ -1.46
SYNE1Q8NF91 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 FSCN1P1-201ENST00000568912 1481 ntBASIC5.9□□□□□ -1.46
SYNE1Q8NF91 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SYNE1Q8NF91 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 ECEL1P1-201ENST00000373592 1742 ntBASIC5.9□□□□□ -1.47
SYNE1Q8NF91 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 ERF-202ENST00000440177 2032 ntTSL 2 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 AC121338.2-201ENST00000622535 1744 ntBASIC5.9□□□□□ -1.47
SYNE1Q8NF91 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 TUB-203ENST00000534099 1759 ntTSL 2 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 MYC-208ENST00000641036 567 ntBASIC5.9□□□□□ -1.47
SYNE1Q8NF91 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC5.9□□□□□ -1.47
SYNE1Q8NF91 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 EGLN1P1-201ENST00000531623 762 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AP002982.1-201ENST00000492365 877 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 NAPSB-206ENST00000562112 1266 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 MED17-221ENST00000639724 2317 ntTSL 5 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AC092338.2-201ENST00000568827 1415 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 HLA-G-202ENST00000376815 851 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 HLA-G-203ENST00000376818 1127 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 FP700111.2-201ENST00000619190 1892 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms