Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 AC006333.2-201ENST00000607957 2099 ntBASIC21.77■■□□□ 1.08
LONRF3Q496Y0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 KRT18P16-201ENST00000510337 1294 ntBASIC21.77■■□□□ 1.08
LONRF3Q496Y0 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 AC233702.5-201ENST00000584107 538 ntBASIC21.77■■□□□ 1.08
LONRF3Q496Y0 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.77■■□□□ 1.08
LONRF3Q496Y0 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.77■■□□□ 1.07
LONRF3Q496Y0 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.76■■□□□ 1.07
LONRF3Q496Y0 TSPY15P-201ENST00000457163 923 ntBASIC21.76■■□□□ 1.07
LONRF3Q496Y0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 AL049637.2-201ENST00000641778 930 ntBASIC21.76■■□□□ 1.07
LONRF3Q496Y0 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LONRF3Q496Y0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 AC012618.2-201ENST00000428058 849 ntBASIC21.75■■□□□ 1.07
LONRF3Q496Y0 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LONRF3Q496Y0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
LONRF3Q496Y0 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.73■■□□□ 1.07
LONRF3Q496Y0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LONRF3Q496Y0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
LONRF3Q496Y0 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms