Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTCHD3Q3KNS1 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 FAM197Y1-201ENST00000421178 764 ntBASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 BX088651.1-201ENST00000540551 451 ntBASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 BX323043.1-201ENST00000641006 1765 ntBASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
PTCHD3Q3KNS1 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 AL353807.1-201ENST00000427475 662 ntBASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 CD177P1-201ENST00000606252 935 ntBASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 REXO1L12P-201ENST00000622156 912 ntBASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD3Q3KNS1 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 ECEL1P3-201ENST00000427961 737 ntBASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 AP002982.1-201ENST00000492365 877 ntBASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 AL355075.4-201ENST00000554988 638 ntBASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 AC026471.5-201ENST00000615068 467 ntBASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
PTCHD3Q3KNS1 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms