Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RFX4Q33E94 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 ZNF815P-204ENST00000434898 1737 ntBASIC17.82■□□□□ 0.44
RFX4Q33E94 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.82■□□□□ 0.44
RFX4Q33E94 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.82■□□□□ 0.44
RFX4Q33E94 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
RFX4Q33E94 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.82■□□□□ 0.44
RFX4Q33E94 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
RFX4Q33E94 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.82■□□□□ 0.44
RFX4Q33E94 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RFX4Q33E94 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
RFX4Q33E94 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.81■□□□□ 0.44
RFX4Q33E94 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
RFX4Q33E94 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX4Q33E94 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.81■□□□□ 0.44
RFX4Q33E94 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RFX4Q33E94 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.81■□□□□ 0.44
RFX4Q33E94 AL512625.2-201ENST00000417533 625 ntBASIC17.81■□□□□ 0.44
RFX4Q33E94 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.81■□□□□ 0.44
RFX4Q33E94 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX4Q33E94 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX4Q33E94 IRX1P1-201ENST00000438849 1838 ntBASIC17.81■□□□□ 0.44
RFX4Q33E94 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX4Q33E94 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX4Q33E94 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.81■□□□□ 0.44
RFX4Q33E94 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.81■□□□□ 0.44
RFX4Q33E94 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.81■□□□□ 0.44
RFX4Q33E94 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RFX4Q33E94 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RFX4Q33E94 LTB4R2-202ENST00000528054 3092 ntBASIC17.8■□□□□ 0.44
RFX4Q33E94 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.8■□□□□ 0.44
RFX4Q33E94 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
RFX4Q33E94 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.8■□□□□ 0.44
RFX4Q33E94 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC17.8■□□□□ 0.44
RFX4Q33E94 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.8■□□□□ 0.44
RFX4Q33E94 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.8■□□□□ 0.44
RFX4Q33E94 MKRN4P-201ENST00000444706 1521 ntBASIC17.8■□□□□ 0.44
RFX4Q33E94 AP000997.3-201ENST00000623333 2250 ntBASIC17.8■□□□□ 0.44
RFX4Q33E94 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.8■□□□□ 0.44
RFX4Q33E94 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
RFX4Q33E94 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
RFX4Q33E94 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
RFX4Q33E94 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.79■□□□□ 0.44
RFX4Q33E94 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.79■□□□□ 0.44
RFX4Q33E94 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.79■□□□□ 0.44
RFX4Q33E94 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.79■□□□□ 0.44
RFX4Q33E94 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX4Q33E94 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms