Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RFX3P48380 Z82202.1-201ENST00000623446 1880 ntBASIC17.99■□□□□ 0.47
RFX3P48380 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.98■□□□□ 0.47
RFX3P48380 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.98■□□□□ 0.47
RFX3P48380 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
RFX3P48380 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.98■□□□□ 0.47
RFX3P48380 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
RFX3P48380 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.98■□□□□ 0.47
RFX3P48380 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.98■□□□□ 0.47
RFX3P48380 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.98■□□□□ 0.47
RFX3P48380 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.98■□□□□ 0.47
RFX3P48380 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.98■□□□□ 0.47
RFX3P48380 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.98■□□□□ 0.47
RFX3P48380 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.98■□□□□ 0.47
RFX3P48380 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.98■□□□□ 0.47
RFX3P48380 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
RFX3P48380 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.98■□□□□ 0.47
RFX3P48380 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
RFX3P48380 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.98■□□□□ 0.47
RFX3P48380 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
RFX3P48380 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
RFX3P48380 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
RFX3P48380 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
RFX3P48380 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RFX3P48380 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.97■□□□□ 0.47
RFX3P48380 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.97■□□□□ 0.47
RFX3P48380 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RFX3P48380 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.97■□□□□ 0.47
RFX3P48380 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX3P48380 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX3P48380 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.97■□□□□ 0.47
RFX3P48380 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.97■□□□□ 0.47
RFX3P48380 AC124016.1-201ENST00000609552 612 ntBASIC17.97■□□□□ 0.47
RFX3P48380 ITM2C-210ENST00000620962 501 ntBASIC17.97■□□□□ 0.47
RFX3P48380 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX3P48380 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.97■□□□□ 0.47
RFX3P48380 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RFX3P48380 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
RFX3P48380 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 AC005332.7-201ENST00000614046 2005 ntBASIC17.96■□□□□ 0.47
RFX3P48380 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
RFX3P48380 LINC01465-201ENST00000408887 1940 ntBASIC17.96■□□□□ 0.47
RFX3P48380 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.96■□□□□ 0.47
RFX3P48380 AL032819.2-201ENST00000624543 2162 ntBASIC17.96■□□□□ 0.47
RFX3P48380 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.96■□□□□ 0.47
RFX3P48380 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
RFX3P48380 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.96■□□□□ 0.47
RFX3P48380 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.96■□□□□ 0.47
RFX3P48380 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.96■□□□□ 0.47
RFX3P48380 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
RFX3P48380 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms