Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC090616.6-201ENST00000582640 721 ntBASIC22.71■■□□□ 1.23
SCN4AP35499 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC22.71■■□□□ 1.23
SCN4AP35499 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
SCN4AP35499 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
SCN4AP35499 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SCN4AP35499 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC22.7■■□□□ 1.22
SCN4AP35499 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
SCN4AP35499 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
SCN4AP35499 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
SCN4AP35499 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
SCN4AP35499 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC22.7■■□□□ 1.22
SCN4AP35499 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SCN4AP35499 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
SCN4AP35499 IGHV3-47-201ENST00000425060 335 ntBASIC22.7■■□□□ 1.22
SCN4AP35499 GPR32P1-201ENST00000601788 811 ntBASIC22.7■■□□□ 1.22
SCN4AP35499 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SCN4AP35499 ABBA01031661.1-201ENST00000634362 1253 ntBASIC22.7■■□□□ 1.22
SCN4AP35499 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SCN4AP35499 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC22.69■■□□□ 1.22
SCN4AP35499 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
SCN4AP35499 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SCN4AP35499 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SCN4AP35499 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC22.69■■□□□ 1.22
SCN4AP35499 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC22.69■■□□□ 1.22
SCN4AP35499 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SCN4AP35499 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SCN4AP35499 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC22.69■■□□□ 1.22
SCN4AP35499 Z83836.1-201ENST00000624605 1642 ntBASIC22.69■■□□□ 1.22
SCN4AP35499 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SCN4AP35499 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SCN4AP35499 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC22.68■■□□□ 1.22
SCN4AP35499 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.68■■□□□ 1.22
SCN4AP35499 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC22.68■■□□□ 1.22
SCN4AP35499 CDV3-207ENST00000508481 661 ntTSL 3 BASIC22.68■■□□□ 1.22
SCN4AP35499 POLD2P1-201ENST00000511220 997 ntBASIC22.68■■□□□ 1.22
SCN4AP35499 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC22.68■■□□□ 1.22
SCN4AP35499 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC22.68■■□□□ 1.22
SCN4AP35499 MIR7706-201ENST00000613747 67 ntBASIC22.68■■□□□ 1.22
SCN4AP35499 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC22.68■■□□□ 1.22
SCN4AP35499 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SCN4AP35499 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.68■■□□□ 1.22
SCN4AP35499 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SCN4AP35499 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SCN4AP35499 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC22.68■■□□□ 1.22
SCN4AP35499 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC22.68■■□□□ 1.22
SCN4AP35499 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
SCN4AP35499 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.68■■□□□ 1.22
SCN4AP35499 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SCN4AP35499 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
SCN4AP35499 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
SCN4AP35499 KRT18P67-201ENST00000432816 1264 ntBASIC22.68■■□□□ 1.22
SCN4AP35499 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC22.68■■□□□ 1.22
SCN4AP35499 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC22.68■■□□□ 1.22
SCN4AP35499 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC22.68■■□□□ 1.22
SCN4AP35499 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC22.68■■□□□ 1.22
SCN4AP35499 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC22.68■■□□□ 1.22
SCN4AP35499 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC22.68■■□□□ 1.22
SCN4AP35499 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC22.68■■□□□ 1.22
SCN4AP35499 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC22.68■■□□□ 1.22
SCN4AP35499 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
SCN4AP35499 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC22.68■■□□□ 1.22
SCN4AP35499 AC243591.1-201ENST00000452967 1364 ntBASIC22.67■■□□□ 1.22
SCN4AP35499 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SCN4AP35499 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SCN4AP35499 BX842568.4-201ENST00000421222 227 ntBASIC22.67■■□□□ 1.22
SCN4AP35499 RNPS1P1-201ENST00000507437 918 ntBASIC22.67■■□□□ 1.22
SCN4AP35499 AC106730.1-201ENST00000566722 1090 ntBASIC22.67■■□□□ 1.22
SCN4AP35499 AL390719.2-201ENST00000606993 987 ntBASIC22.67■■□□□ 1.22
SCN4AP35499 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SCN4AP35499 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC22.67■■□□□ 1.22
SCN4AP35499 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SCN4AP35499 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
SCN4AP35499 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.67■■□□□ 1.22
SCN4AP35499 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC22.67■■□□□ 1.22
SCN4AP35499 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
SCN4AP35499 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
SCN4AP35499 LSM5-204ENST00000409909 740 ntTSL 2 BASIC22.66■■□□□ 1.22
SCN4AP35499 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC22.66■■□□□ 1.22
SCN4AP35499 FICD-205ENST00000552758 603 ntTSL 2 BASIC22.66■■□□□ 1.22
SCN4AP35499 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
SCN4AP35499 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC22.66■■□□□ 1.22
SCN4AP35499 ANKRD18DP-204ENST00000455355 1975 ntBASIC22.66■■□□□ 1.22
SCN4AP35499 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
SCN4AP35499 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SCN4AP35499 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
SCN4AP35499 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC22.66■■□□□ 1.22
SCN4AP35499 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SCN4AP35499 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SCN4AP35499 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SCN4AP35499 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC22.66■■□□□ 1.22
SCN4AP35499 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC22.66■■□□□ 1.22
SCN4AP35499 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
SCN4AP35499 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC22.66■■□□□ 1.22
SCN4AP35499 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
SCN4AP35499 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SCN4AP35499 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SCN4AP35499 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SCN4AP35499 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.65■■□□□ 1.22
SCN4AP35499 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SCN4AP35499 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms