Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL136038.4-201ENST00000603606 1261 ntBASIC20.04■□□□□ 0.8
COL6A3P12111 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A3P12111 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A3P12111 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.04■□□□□ 0.8
COL6A3P12111 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A3P12111 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A3P12111 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A3P12111 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL6A3P12111 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A3P12111 AL391807.1-203ENST00000604392 2365 ntBASIC20.03■□□□□ 0.8
COL6A3P12111 KRT8P17-201ENST00000453110 1448 ntBASIC20.03■□□□□ 0.8
COL6A3P12111 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.03■□□□□ 0.8
COL6A3P12111 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A3P12111 MIR2861-201ENST00000636310 90 ntBASIC20.03■□□□□ 0.8
COL6A3P12111 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A3P12111 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A3P12111 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A3P12111 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A3P12111 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A3P12111 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A3P12111 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A3P12111 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
COL6A3P12111 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.03■□□□□ 0.8
COL6A3P12111 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A3P12111 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A3P12111 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A3P12111 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A3P12111 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.03■□□□□ 0.8
COL6A3P12111 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A3P12111 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A3P12111 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A3P12111 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A3P12111 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A3P12111 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC20.02■□□□□ 0.8
COL6A3P12111 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A3P12111 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A3P12111 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
COL6A3P12111 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A3P12111 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A3P12111 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A3P12111 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.02■□□□□ 0.8
COL6A3P12111 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A3P12111 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
COL6A3P12111 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A3P12111 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.02■□□□□ 0.8
COL6A3P12111 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.02■□□□□ 0.8
COL6A3P12111 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL6A3P12111 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
COL6A3P12111 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 KRT18P3-201ENST00000451602 1288 ntBASIC20.01■□□□□ 0.79
COL6A3P12111 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
COL6A3P12111 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A3P12111 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.01■□□□□ 0.79
COL6A3P12111 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.01■□□□□ 0.79
COL6A3P12111 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A3P12111 PNMT-202ENST00000394246 821 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A3P12111 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
COL6A3P12111 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.01■□□□□ 0.79
COL6A3P12111 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
COL6A3P12111 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A3P12111 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A3P12111 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.01■□□□□ 0.79
COL6A3P12111 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
COL6A3P12111 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.01■□□□□ 0.79
COL6A3P12111 AC091607.1-201ENST00000490318 1060 ntBASIC20.01■□□□□ 0.79
COL6A3P12111 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC20.01■□□□□ 0.79
COL6A3P12111 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL6A3P12111 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20■□□□□ 0.79
COL6A3P12111 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20■□□□□ 0.79
COL6A3P12111 PON3-203ENST00000427422 894 ntTSL 3 BASIC20■□□□□ 0.79
COL6A3P12111 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20■□□□□ 0.79
COL6A3P12111 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
COL6A3P12111 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
COL6A3P12111 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20■□□□□ 0.79
COL6A3P12111 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A3P12111 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms