Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RTN3O95197 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.18■□□□□ 0.82
RTN3O95197 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
RTN3O95197 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.18■□□□□ 0.82
RTN3O95197 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.18■□□□□ 0.82
RTN3O95197 FAM210CP-201ENST00000445714 574 ntBASIC20.18■□□□□ 0.82
RTN3O95197 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.18■□□□□ 0.82
RTN3O95197 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
RTN3O95197 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RTN3O95197 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.18■□□□□ 0.82
RTN3O95197 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
RTN3O95197 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.18■□□□□ 0.82
RTN3O95197 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.18■□□□□ 0.82
RTN3O95197 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RTN3O95197 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RTN3O95197 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RTN3O95197 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.18■□□□□ 0.82
RTN3O95197 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
RTN3O95197 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
RTN3O95197 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RTN3O95197 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RTN3O95197 AC128688.1-201ENST00000487626 519 ntBASIC20.17■□□□□ 0.82
RTN3O95197 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.17■□□□□ 0.82
RTN3O95197 PRSS44-201ENST00000515154 1146 ntBASIC20.17■□□□□ 0.82
RTN3O95197 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.17■□□□□ 0.82
RTN3O95197 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 CKBP1-201ENST00000565489 1086 ntBASIC20.17■□□□□ 0.82
RTN3O95197 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
RTN3O95197 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.17■□□□□ 0.82
RTN3O95197 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
RTN3O95197 AC005363.2-201ENST00000618631 242 ntBASIC20.17■□□□□ 0.82
RTN3O95197 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.17■□□□□ 0.82
RTN3O95197 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
RTN3O95197 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RTN3O95197 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RTN3O95197 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RTN3O95197 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
RTN3O95197 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.16■□□□□ 0.82
RTN3O95197 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
RTN3O95197 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.16■□□□□ 0.82
RTN3O95197 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.16■□□□□ 0.82
RTN3O95197 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RTN3O95197 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.16■□□□□ 0.82
RTN3O95197 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.16■□□□□ 0.82
RTN3O95197 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RTN3O95197 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTN3O95197 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTN3O95197 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.15■□□□□ 0.82
RTN3O95197 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.15■□□□□ 0.82
RTN3O95197 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
RTN3O95197 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
RTN3O95197 SLC25A1P2-201ENST00000430693 912 ntBASIC20.15■□□□□ 0.82
RTN3O95197 CCR12P-201ENST00000446203 998 ntBASIC20.15■□□□□ 0.82
RTN3O95197 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.15■□□□□ 0.82
RTN3O95197 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.15■□□□□ 0.82
RTN3O95197 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.15■□□□□ 0.82
RTN3O95197 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
RTN3O95197 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
RTN3O95197 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RTN3O95197 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTN3O95197 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.15■□□□□ 0.82
RTN3O95197 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTN3O95197 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTN3O95197 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTN3O95197 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RTN3O95197 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTN3O95197 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RTN3O95197 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.15■□□□□ 0.82
RTN3O95197 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms