Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 REXO1L10P-201ENST00000615707 1290 ntBASIC25.9■■□□□ 1.74
MSH5O43196 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC25.9■■□□□ 1.74
MSH5O43196 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC25.9■■□□□ 1.74
MSH5O43196 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH5O43196 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH5O43196 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH5O43196 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH5O43196 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH5O43196 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MSH5O43196 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC25.9■■□□□ 1.74
MSH5O43196 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC25.89■■□□□ 1.74
MSH5O43196 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
MSH5O43196 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
MSH5O43196 AL390955.1-201ENST00000428694 934 ntBASIC25.89■■□□□ 1.74
MSH5O43196 AC017099.1-201ENST00000448261 1028 ntBASIC25.89■■□□□ 1.74
MSH5O43196 FDX2-207ENST00000494368 584 ntTSL 4 BASIC25.89■■□□□ 1.74
MSH5O43196 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
MSH5O43196 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC25.89■■□□□ 1.74
MSH5O43196 NUDT16P1-203ENST00000513809 620 ntBASIC25.89■■□□□ 1.74
MSH5O43196 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
MSH5O43196 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
MSH5O43196 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC25.89■■□□□ 1.74
MSH5O43196 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
MSH5O43196 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC25.89■■□□□ 1.74
MSH5O43196 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC25.89■■□□□ 1.74
MSH5O43196 AL356652.1-201ENST00000615962 565 ntBASIC25.89■■□□□ 1.74
MSH5O43196 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC25.89■■□□□ 1.74
MSH5O43196 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
MSH5O43196 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
MSH5O43196 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC25.89■■□□□ 1.73
MSH5O43196 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
MSH5O43196 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.73
MSH5O43196 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
MSH5O43196 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
MSH5O43196 KRT18P22-201ENST00000402024 1347 ntBASIC25.88■■□□□ 1.73
MSH5O43196 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH5O43196 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC25.88■■□□□ 1.73
MSH5O43196 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC25.88■■□□□ 1.73
MSH5O43196 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
MSH5O43196 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
MSH5O43196 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH5O43196 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
MSH5O43196 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH5O43196 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH5O43196 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC25.88■■□□□ 1.73
MSH5O43196 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC25.88■■□□□ 1.73
MSH5O43196 DUX4L26-201ENST00000489078 1255 ntBASIC25.88■■□□□ 1.73
MSH5O43196 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.88■■□□□ 1.73
MSH5O43196 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MSH5O43196 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC25.88■■□□□ 1.73
MSH5O43196 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC25.88■■□□□ 1.73
MSH5O43196 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH5O43196 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH5O43196 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC25.87■■□□□ 1.73
MSH5O43196 CYP2D8P-201ENST00000433633 1490 ntBASIC25.87■■□□□ 1.73
MSH5O43196 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC25.87■■□□□ 1.73
MSH5O43196 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
MSH5O43196 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
MSH5O43196 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
MSH5O43196 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH5O43196 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH5O43196 MTCYBP15-201ENST00000433123 1127 ntBASIC25.87■■□□□ 1.73
MSH5O43196 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC25.87■■□□□ 1.73
MSH5O43196 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC25.87■■□□□ 1.73
MSH5O43196 AP001830.1-201ENST00000528717 692 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH5O43196 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC25.87■■□□□ 1.73
MSH5O43196 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC25.87■■□□□ 1.73
MSH5O43196 USF2-205ENST00000594064 1179 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH5O43196 AC024933.1-201ENST00000608472 348 ntBASIC25.87■■□□□ 1.73
MSH5O43196 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH5O43196 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH5O43196 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH5O43196 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC25.87■■□□□ 1.73
MSH5O43196 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH5O43196 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
MSH5O43196 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH5O43196 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC25.86■■□□□ 1.73
MSH5O43196 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC25.86■■□□□ 1.73
MSH5O43196 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC25.86■■□□□ 1.73
MSH5O43196 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH5O43196 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
MSH5O43196 AC104076.2-201ENST00000448912 469 ntBASIC25.86■■□□□ 1.73
MSH5O43196 AC114322.1-201ENST00000506771 926 ntBASIC25.86■■□□□ 1.73
MSH5O43196 AC097487.1-201ENST00000514134 934 ntTSL 3 BASIC25.86■■□□□ 1.73
MSH5O43196 AL109741.3-201ENST00000561748 592 ntBASIC25.86■■□□□ 1.73
MSH5O43196 RBM42-202ENST00000586618 771 ntTSL 3 BASIC25.86■■□□□ 1.73
MSH5O43196 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
MSH5O43196 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH5O43196 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC25.86■■□□□ 1.73
MSH5O43196 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC25.86■■□□□ 1.73
MSH5O43196 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH5O43196 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH5O43196 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
MSH5O43196 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH5O43196 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
MSH5O43196 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC25.85■■□□□ 1.73
MSH5O43196 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC25.85■■□□□ 1.73
MSH5O43196 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
MSH5O43196 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MSH5O43196 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms