Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CUX2O14529 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC32.82■■■□□ 2.84
CUX2O14529 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CUX2O14529 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
CUX2O14529 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CUX2O14529 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.84
CUX2O14529 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC32.81■■■□□ 2.84
CUX2O14529 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC32.81■■■□□ 2.84
CUX2O14529 DNAJB3-202ENST00000449667 1266 ntBASIC32.81■■■□□ 2.84
CUX2O14529 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC32.81■■■□□ 2.84
CUX2O14529 FEM1AP4-201ENST00000443167 1987 ntBASIC32.81■■■□□ 2.84
CUX2O14529 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CUX2O14529 KRT8P41-201ENST00000533985 1514 ntBASIC32.81■■■□□ 2.84
CUX2O14529 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC32.81■■■□□ 2.84
CUX2O14529 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CUX2O14529 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CUX2O14529 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CUX2O14529 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC32.81■■■□□ 2.84
CUX2O14529 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC32.8■■■□□ 2.84
CUX2O14529 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC32.8■■■□□ 2.84
CUX2O14529 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC32.8■■■□□ 2.84
CUX2O14529 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 AC133561.1-201ENST00000568600 2415 ntBASIC32.8■■■□□ 2.84
CUX2O14529 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 EMD-201ENST00000369835 966 ntTSL 3 BASIC32.8■■■□□ 2.84
CUX2O14529 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 DNAJB3-201ENST00000446806 729 ntBASIC32.8■■■□□ 2.84
CUX2O14529 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC32.8■■■□□ 2.84
CUX2O14529 AC092364.2-202ENST00000597012 1073 ntBASIC32.8■■■□□ 2.84
CUX2O14529 AL136038.4-201ENST00000603606 1261 ntBASIC32.8■■■□□ 2.84
CUX2O14529 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
CUX2O14529 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC32.8■■■□□ 2.84
CUX2O14529 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC32.79■■■□□ 2.84
CUX2O14529 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
CUX2O14529 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX2O14529 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
CUX2O14529 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC32.78■■■□□ 2.84
CUX2O14529 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC32.78■■■□□ 2.84
CUX2O14529 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC32.78■■■□□ 2.84
CUX2O14529 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
CUX2O14529 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC32.78■■■□□ 2.84
CUX2O14529 PHGDH-210ENST00000641115 1638 ntBASIC32.78■■■□□ 2.84
CUX2O14529 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX2O14529 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC32.78■■■□□ 2.84
CUX2O14529 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC32.78■■■□□ 2.84
CUX2O14529 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC32.78■■■□□ 2.84
CUX2O14529 AC090616.6-201ENST00000582640 721 ntBASIC32.78■■■□□ 2.84
CUX2O14529 PRKN-208ENST00000610470 531 ntTSL 2 BASIC32.78■■■□□ 2.84
CUX2O14529 AC027601.4-201ENST00000611259 610 ntBASIC32.78■■■□□ 2.84
CUX2O14529 PRKN-209ENST00000612485 225 ntTSL 5 BASIC32.78■■■□□ 2.84
CUX2O14529 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC32.78■■■□□ 2.84
CUX2O14529 CCNC-219ENST00000627680 896 ntTSL 5 BASIC32.78■■■□□ 2.84
CUX2O14529 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX2O14529 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
CUX2O14529 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX2O14529 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX2O14529 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC32.77■■■□□ 2.84
CUX2O14529 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC32.77■■■□□ 2.84
CUX2O14529 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
CUX2O14529 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
CUX2O14529 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC32.77■■■□□ 2.84
CUX2O14529 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC32.77■■■□□ 2.84
CUX2O14529 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC32.77■■■□□ 2.84
CUX2O14529 METTL21AP1-201ENST00000438852 635 ntBASIC32.77■■■□□ 2.84
CUX2O14529 COX20P2-201ENST00000452636 358 ntBASIC32.77■■■□□ 2.84
CUX2O14529 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC32.77■■■□□ 2.84
CUX2O14529 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC32.77■■■□□ 2.84
CUX2O14529 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC32.77■■■□□ 2.84
CUX2O14529 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC32.77■■■□□ 2.84
CUX2O14529 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC32.77■■■□□ 2.84
CUX2O14529 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
CUX2O14529 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
CUX2O14529 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
CUX2O14529 TMEM179-206ENST00000616017 1645 ntBASIC32.77■■■□□ 2.84
CUX2O14529 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
CUX2O14529 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
CUX2O14529 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC32.76■■■□□ 2.84
CUX2O14529 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
CUX2O14529 KRT16P6-202ENST00000425692 1426 ntBASIC32.76■■■□□ 2.84
CUX2O14529 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC32.76■■■□□ 2.84
CUX2O14529 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
CUX2O14529 IMP4-203ENST00000409935 958 ntTSL 5 BASIC32.76■■■□□ 2.84
CUX2O14529 MED15P5-201ENST00000423150 992 ntBASIC32.76■■■□□ 2.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms