Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.27■□□□□ 0.67
TRIM38O00635 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM38O00635 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM38O00635 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.27■□□□□ 0.67
TRIM38O00635 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM38O00635 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM38O00635 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM38O00635 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 AP006587.1-201ENST00000534129 1502 ntBASIC19.26■□□□□ 0.67
TRIM38O00635 AC093484.2-201ENST00000580996 2166 ntBASIC19.26■□□□□ 0.67
TRIM38O00635 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.26■□□□□ 0.67
TRIM38O00635 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.26■□□□□ 0.67
TRIM38O00635 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.26■□□□□ 0.67
TRIM38O00635 AL590326.2-201ENST00000625139 305 ntBASIC19.26■□□□□ 0.67
TRIM38O00635 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.26■□□□□ 0.67
TRIM38O00635 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM38O00635 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM38O00635 KRT18P22-201ENST00000402024 1347 ntBASIC19.25■□□□□ 0.67
TRIM38O00635 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM38O00635 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM38O00635 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
TRIM38O00635 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM38O00635 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM38O00635 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM38O00635 C1QL1P1-201ENST00000568105 661 ntBASIC19.25■□□□□ 0.67
TRIM38O00635 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
TRIM38O00635 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM38O00635 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM38O00635 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
TRIM38O00635 DPP3P2-201ENST00000416030 1696 ntBASIC19.24■□□□□ 0.67
TRIM38O00635 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRIM38O00635 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TRIM38O00635 TERF1P1-201ENST00000311003 1181 ntBASIC19.24■□□□□ 0.67
TRIM38O00635 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM38O00635 MESTP1-201ENST00000404287 994 ntBASIC19.24■□□□□ 0.67
TRIM38O00635 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM38O00635 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM38O00635 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM38O00635 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM38O00635 AL031985.4-201ENST00000642138 673 ntBASIC19.24■□□□□ 0.67
TRIM38O00635 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM38O00635 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TRIM38O00635 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM38O00635 AL691432.2-201ENST00000607222 2038 ntBASIC19.24■□□□□ 0.67
TRIM38O00635 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM38O00635 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 AL137013.1-201ENST00000432946 1228 ntBASIC19.23■□□□□ 0.67
TRIM38O00635 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM38O00635 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM38O00635 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM38O00635 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRIM38O00635 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM38O00635 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.23■□□□□ 0.67
TRIM38O00635 TREX1-205ENST00000625293 1783 ntBASIC19.23■□□□□ 0.67
TRIM38O00635 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 AC073508.3-201ENST00000619697 1419 ntBASIC19.23■□□□□ 0.67
TRIM38O00635 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM38O00635 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms