Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RN7SKP60-201ENST00000516985 239 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXA1P49639 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA1P49639 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA1P49639 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA1P49639 EEF1B2P4-201ENST00000551398 348 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA1P49639 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA1P49639 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA1P49639 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA1P49639 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA1P49639 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA1P49639 CKS1BP3-201ENST00000600888 237 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC126118.1-201ENST00000607744 628 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 FAM25E-202ENST00000608562 189 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC019193.2-201ENST00000610012 634 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC105429.2-201ENST00000610567 517 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC012409.3-201ENST00000611343 981 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC108479.2-201ENST00000617314 601 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC009159.1-201ENST00000618386 642 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXA1P49639 AC009268.2-201ENST00000621925 457 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA1P49639 AC010149.2-201ENST00000637608 315 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 OR5H6-203ENST00000642105 978 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 ZNF33CP-201ENST00000432492 2030 ntBASIC3.37□□□□□ -1.87
HOXA1P49639 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
HOXA1P49639 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA1P49639 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
HOXA1P49639 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA1P49639 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA1P49639 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.36□□□□□ -1.87
HOXA1P49639 NOL8P1-201ENST00000508336 3529 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
HOXA1P49639 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA1P49639 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.36□□□□□ -1.87
HOXA1P49639 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
HOXA1P49639 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 SNORA70F-201ENST00000384142 135 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 RNU6-114P-201ENST00000384704 105 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
HOXA1P49639 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
HOXA1P49639 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 CHIAP3-201ENST00000423668 1133 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AC007283.2-201ENST00000424739 197 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AL590762.4-201ENST00000425885 253 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AL360081.1-201ENST00000428299 555 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 RPL31P35-201ENST00000431058 377 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AC104850.1-201ENST00000435940 476 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AL451074.3-201ENST00000437709 472 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 FTH1P1-201ENST00000437933 532 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AL512326.1-201ENST00000443050 721 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA1P49639 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA1P49639 RPL23AP81-201ENST00000455252 467 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA1P49639 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA1P49639 AC021382.1-201ENST00000483523 359 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA1P49639 AC092185.1-201ENST00000491371 97 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA1P49639 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA1P49639 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXA1P49639 MTND4LP26-201ENST00000518144 282 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA1P49639 AC107934.1-201ENST00000522215 217 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXA1P49639 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 AC084783.1-201ENST00000565846 910 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXA1P49639 MIR3118-1-201ENST00000581787 76 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AC012669.1-201ENST00000603209 283 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 BX664608.1-201ENST00000610519 487 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 AC006065.5-201ENST00000623427 349 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AL160394.1-201ENST00000624765 724 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXA1P49639 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 SEPT14P19-203ENST00000633205 211 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 AC138649.5-201ENST00000637456 137 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 LRRC77P-213ENST00000637727 880 ntBASIC3.36□□□□□ -1.87
HOXA1P49639 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXA1P49639 OR56B2P-202ENST00000641377 2453 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.35□□□□□ -1.87
HOXA1P49639 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXA1P49639 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA1P49639 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA1P49639 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA1P49639 Y_RNA.6-201ENST00000362350 114 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 SNORA58B-201ENST00000364259 136 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 RNY4P16-201ENST00000364768 94 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms