Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC008687.2-201ENST00000597865 520 ntBASIC2.88□□□□□ -1.95
BRCA1P38398 HSPE1P14-201ENST00000605812 302 ntBASIC2.88□□□□□ -1.95
BRCA1P38398 AP004247.3-201ENST00000608682 624 ntBASIC2.88□□□□□ -1.95
BRCA1P38398 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.88□□□□□ -1.95
BRCA1P38398 CUL1P1-201ENST00000509510 2425 ntBASIC2.87□□□□□ -1.95
BRCA1P38398 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
BRCA1P38398 AL355578.1-201ENST00000607405 1328 ntBASIC2.87□□□□□ -1.95
BRCA1P38398 FAT1P1-201ENST00000406588 507 ntBASIC2.87□□□□□ -1.95
BRCA1P38398 RPS26P56-201ENST00000444468 240 ntBASIC2.87□□□□□ -1.95
BRCA1P38398 MRPL50P4-201ENST00000446432 475 ntBASIC2.87□□□□□ -1.95
BRCA1P38398 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.87□□□□□ -1.95
BRCA1P38398 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.87□□□□□ -1.95
BRCA1P38398 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.87□□□□□ -1.95
BRCA1P38398 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.87□□□□□ -1.95
BRCA1P38398 AC092470.1-201ENST00000546187 132 ntBASIC2.87□□□□□ -1.95
BRCA1P38398 AL671309.1-201ENST00000603750 544 ntBASIC2.87□□□□□ -1.95
BRCA1P38398 AC009220.3-201ENST00000604318 586 ntBASIC2.87□□□□□ -1.95
BRCA1P38398 AC018926.3-201ENST00000618841 406 ntBASIC2.87□□□□□ -1.95
BRCA1P38398 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.87□□□□□ -1.95
BRCA1P38398 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.87□□□□□ -1.95
BRCA1P38398 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.86□□□□□ -1.95
BRCA1P38398 AL021368.2-201ENST00000606125 5352 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 MTCYBP24-201ENST00000420387 1106 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 AL009174.1-201ENST00000426577 416 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 AC093422.3-201ENST00000428506 305 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 RPS7P2-201ENST00000435134 607 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC2.86□□□□□ -1.95
BRCA1P38398 RPL21P104-201ENST00000464143 478 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 HMGB1P1-201ENST00000522557 636 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 GNAI2P1-201ENST00000541815 315 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.86□□□□□ -1.95
BRCA1P38398 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.86□□□□□ -1.95
BRCA1P38398 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.86□□□□□ -1.95
BRCA1P38398 LRRC77P-213ENST00000637727 880 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
BRCA1P38398 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
BRCA1P38398 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
BRCA1P38398 AC008432.1-201ENST00000615912 1320 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
BRCA1P38398 ZNF37BP-203ENST00000452306 1352 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 RNA5SP213-201ENST00000391031 106 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 AL138880.1-201ENST00000405824 642 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 AL162578.1-201ENST00000406202 378 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 RNU4-27P-201ENST00000410889 139 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 RPS20P25-201ENST00000412447 352 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.86□□□□□ -1.95
BRCA1P38398 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.86□□□□□ -1.95
BRCA1P38398 AC092754.2-201ENST00000463506 460 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.86□□□□□ -1.95
BRCA1P38398 OR8K4P-201ENST00000534608 872 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.86□□□□□ -1.95
BRCA1P38398 AC004217.3-201ENST00000551552 878 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 SNRPGP18-201ENST00000553000 214 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.86□□□□□ -1.95
BRCA1P38398 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC2.86□□□□□ -1.95
BRCA1P38398 MIR6766-201ENST00000622641 72 ntBASIC2.86□□□□□ -1.95
BRCA1P38398 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.85□□□□□ -1.95
BRCA1P38398 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.85□□□□□ -1.95
BRCA1P38398 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
BRCA1P38398 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
BRCA1P38398 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.85□□□□□ -1.95
BRCA1P38398 RNU6-1243P-201ENST00000364028 107 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
BRCA1P38398 TRIM60P5Y-201ENST00000413946 574 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 AL158825.1-201ENST00000414735 521 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.85□□□□□ -1.95
BRCA1P38398 GTF2IP12-201ENST00000456547 356 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 CEACAMP4-201ENST00000457676 421 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 RPL9P33-201ENST00000484311 566 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 AL024509.2-201ENST00000493462 493 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.85□□□□□ -1.95
BRCA1P38398 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.85□□□□□ -1.95
BRCA1P38398 AC090695.1-201ENST00000561269 1222 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC2.85□□□□□ -1.95
BRCA1P38398 BPTFP1-201ENST00000579209 492 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC2.85□□□□□ -1.95
BRCA1P38398 AC092650.2-201ENST00000619984 902 ntBASIC2.85□□□□□ -1.95
BRCA1P38398 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
BRCA1P38398 MTND4P8-201ENST00000514997 1362 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
BRCA1P38398 RNU6-1005P-201ENST00000384519 107 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
BRCA1P38398 RPL23AP36-201ENST00000413895 458 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 RPS15AP40-201ENST00000419621 391 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 OFD1P18Y-201ENST00000420889 959 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 MTND2P3-201ENST00000452458 470 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.84□□□□□ -1.95
BRCA1P38398 RNU6-488P-201ENST00000515918 99 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 RNU1-61P-201ENST00000516107 151 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC2.84□□□□□ -1.95
BRCA1P38398 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.84□□□□□ -1.95
BRCA1P38398 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.84□□□□□ -1.95
BRCA1P38398 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.84□□□□□ -1.95
BRCA1P38398 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.84□□□□□ -1.95
BRCA1P38398 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.84□□□□□ -1.95
BRCA1P38398 AP002906.1-201ENST00000603405 233 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 AL354696.1-201ENST00000614652 497 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 RMST_10.1-201ENST00000616309 154 ntBASIC2.84□□□□□ -1.95
BRCA1P38398 AC092608.3-201ENST00000625017 386 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms