Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.9□□□□□ -1.47
CCDC87Q9NVE4 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC87Q9NVE4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
CCDC87Q9NVE4 AC006484.1-201ENST00000435086 1884 ntBASIC5.9□□□□□ -1.47
CCDC87Q9NVE4 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.9□□□□□ -1.47
CCDC87Q9NVE4 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 RNU6-511P-201ENST00000363496 107 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 RNU2-39P-201ENST00000410604 198 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC011933.1-201ENST00000413334 321 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 NDUFB4P5-201ENST00000415445 361 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 OR1AA1P-201ENST00000419597 916 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC006946.1-201ENST00000429106 328 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 MTATP6P16-201ENST00000434543 526 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 RPL36AP6-201ENST00000435770 321 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 SNORD19B-201ENST00000459623 84 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC116533.1-201ENST00000459748 321 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC020893.1-201ENST00000502452 580 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC004062.1-201ENST00000509926 645 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 RNU6-327P-201ENST00000516270 127 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC005868.1-201ENST00000536421 331 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AL023881.1-201ENST00000621088 301 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 RNA5SP196-201ENST00000625967 102 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 AC134503.1-201ENST00000633048 54 ntBASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
CCDC87Q9NVE4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AC005332.5-201ENST00000591222 2919 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 Y_RNA.138-201ENST00000363462 102 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 RN7SKP280-201ENST00000364196 304 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 RNU4-66P-201ENST00000365199 138 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AL606923.1-201ENST00000406616 190 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 OR6C66P-201ENST00000414917 930 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 RPS15AP40-201ENST00000419621 391 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 MTND2P23-201ENST00000422990 651 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AC011998.1-201ENST00000433403 117 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 KCTD9P3-201ENST00000434597 1169 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 OR4C10P-201ENST00000434991 931 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 PHBP16-201ENST00000446318 950 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AC006480.1-201ENST00000449887 378 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AL590639.1-201ENST00000456484 337 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AP002812.1-201ENST00000495378 474 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 HMGB1P21-201ENST00000502313 581 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 RNU6-1170P-201ENST00000515974 106 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 SUMO2P20-201ENST00000520803 283 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AC026464.5-201ENST00000562497 722 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AL355812.1-201ENST00000603215 216 ntBASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 TEX41-265ENST00000627785 704 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC87Q9NVE4 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms