Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC090312.1-201ENST00000580637 348 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MIR3118-1-201ENST00000581787 76 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL355810.1-201ENST00000614629 552 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC009237.17-201ENST00000618111 748 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC091953.2-201ENST00000623979 160 ntBASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 XPOTP1-201ENST00000443317 2398 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 VPS35P1-201ENST00000563400 1518 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU4-66P-201ENST00000365199 138 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 Y_RNA.447-201ENST00000384184 113 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ARL5AP1-201ENST00000418991 388 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL139396.1-201ENST00000421137 167 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 HMGN2P27-201ENST00000427352 270 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RPL23AP50-201ENST00000434149 455 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 HMGB1P12-201ENST00000438594 598 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RPL36AP15-201ENST00000444514 266 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 KNOP1P3-201ENST00000446933 426 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RN7SL542P-201ENST00000467147 294 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC006512.1-201ENST00000468816 291 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC140172.1-201ENST00000502928 141 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU6-1220P-201ENST00000517126 108 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AP001804.3-201ENST00000525146 880 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC107016.1-201ENST00000550463 337 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC006349.1-201ENST00000555526 235 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC020634.1-201ENST00000608701 549 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC098479.1-201ENST00000609225 154 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL049794.2-201ENST00000616301 365 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC007485.1-201ENST00000616755 206 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SOCS5P3-201ENST00000425115 1576 ntBASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC6.46□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC099654.2-201ENST00000433031 1980 ntBASIC6.46□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 U3.12-201ENST00000364498 214 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SNORA62.2-201ENST00000364672 152 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU4-48P-201ENST00000365559 182 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU1-82P-201ENST00000390851 165 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-954P-201ENST00000411355 107 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 E2F6P2-201ENST00000420708 748 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPS7P5-201ENST00000441482 581 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 HMGB3P17-201ENST00000504195 649 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RN7SKP260-201ENST00000516907 149 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MIR4790-201ENST00000577799 79 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC113195.1-201ENST00000579952 141 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 BX005214.3-202ENST00000619809 325 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms