Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL9A1P20849 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
COL9A1P20849 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC6.31□□□□□ -1.4
COL9A1P20849 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.31□□□□□ -1.4
COL9A1P20849 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC6.3□□□□□ -1.4
COL9A1P20849 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.3□□□□□ -1.4
COL9A1P20849 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.3□□□□□ -1.4
COL9A1P20849 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC6.3□□□□□ -1.4
COL9A1P20849 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
COL9A1P20849 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
COL9A1P20849 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.3□□□□□ -1.4
COL9A1P20849 SELENOWP1-201ENST00000322792 252 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 Y_RNA.262-201ENST00000364641 102 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 Y_RNA.286-201ENST00000364813 102 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
COL9A1P20849 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL9A1P20849 RNU6-21P-201ENST00000384710 107 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 SNORA46.1-201ENST00000391069 153 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 RNU6ATAC34P-201ENST00000408879 121 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.3□□□□□ -1.4
COL9A1P20849 FTH1P10-202ENST00000430907 550 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.3□□□□□ -1.4
COL9A1P20849 RPS26P21-201ENST00000475397 348 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 AP001025.1-201ENST00000486139 332 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 AL160314.1-201ENST00000490836 438 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 AC005840.1-201ENST00000498412 377 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 SNORA58-201ENST00000505219 137 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC6.3□□□□□ -1.4
COL9A1P20849 AK6P2-201ENST00000549020 471 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 OR4H12P-201ENST00000556269 907 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.3□□□□□ -1.4
COL9A1P20849 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.3□□□□□ -1.4
COL9A1P20849 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.3□□□□□ -1.4
COL9A1P20849 MIR3684-201ENST00000579779 74 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 RPL12P48-201ENST00000605620 304 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 Z99571.1-201ENST00000636677 394 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL9A1P20849 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC6.3□□□□□ -1.4
COL9A1P20849 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL9A1P20849 RBMY1HP-201ENST00000382759 1389 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 AC083843.3-201ENST00000623679 2186 ntBASIC6.3□□□□□ -1.4
COL9A1P20849 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL9A1P20849 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 AC138907.8-201ENST00000623981 2256 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC6.29□□□□□ -1.4
COL9A1P20849 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 PRNCR1-201ENST00000635449 12727 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC6.29□□□□□ -1.4
COL9A1P20849 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 RNU6-1298P-201ENST00000362456 101 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 AL662874.1-201ENST00000426065 230 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 RANP8-201ENST00000444720 713 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.29□□□□□ -1.4
COL9A1P20849 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC6.29□□□□□ -1.4
COL9A1P20849 AC034236.1-201ENST00000469891 373 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 AC092865.4-201ENST00000477936 615 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 RN7SL459P-201ENST00000481078 302 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 AC091959.1-201ENST00000495857 238 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 RFPL4AP5-201ENST00000514977 504 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.29□□□□□ -1.4
COL9A1P20849 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC6.29□□□□□ -1.4
COL9A1P20849 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.29□□□□□ -1.4
COL9A1P20849 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.29□□□□□ -1.4
COL9A1P20849 MIR4776-2-201ENST00000580204 80 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.29□□□□□ -1.4
COL9A1P20849 AC067852.4-201ENST00000590314 478 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 HCG18-243ENST00000602498 327 ntTSL 3 BASIC6.29□□□□□ -1.4
COL9A1P20849 AL132640.3-201ENST00000630473 177 ntBASIC6.29□□□□□ -1.4
COL9A1P20849 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC6.29□□□□□ -1.4
COL9A1P20849 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.29□□□□□ -1.4
COL9A1P20849 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COL9A1P20849 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL9A1P20849 AC233981.2-201ENST00000611524 1614 ntBASIC6.28□□□□□ -1.4
COL9A1P20849 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms