Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC110801.1-201ENST00000623590 212 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 AC093775.1-201ENST00000624154 1868 ntBASIC5.72□□□□□ -1.49
USP3Q9Y6I4 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP3Q9Y6I4 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.71□□□□□ -1.49
USP3Q9Y6I4 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
USP3Q9Y6I4 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.49
USP3Q9Y6I4 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.461-201ENST00000384263 103 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 RNU6-472P-201ENST00000384299 107 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.473-201ENST00000384333 102 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.526-201ENST00000384572 110 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 RPL7P2-201ENST00000427639 268 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AC097713.2-201ENST00000430199 356 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 RPS15AP10-201ENST00000432472 382 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 CYCSP34-201ENST00000458172 304 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 RN7SL197P-201ENST00000466981 299 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AC114801.2-201ENST00000503825 781 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AC097486.1-201ENST00000515331 210 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 RNU6-1023P-201ENST00000516137 106 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 MIR4433B-201ENST00000581329 102 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AC125232.2-201ENST00000592457 143 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AC073869.8-201ENST00000641806 335 ntBASIC5.71□□□□□ -1.5
USP3Q9Y6I4 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
USP3Q9Y6I4 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.512-201ENST00000384518 102 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 RNU1-77P-201ENST00000390868 162 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 RNA5SP339-201ENST00000390987 122 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 RPL21P1-201ENST00000399532 476 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC097374.1-203ENST00000400783 485 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AL133388.1-201ENST00000404509 287 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 BX510359.3-201ENST00000422168 306 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 RPL7L1P9-201ENST00000431298 745 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 GSTM5P1-201ENST00000434751 660 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 OR1H1P-201ENST00000448731 937 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AL162389.1-201ENST00000449233 177 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC239809.1-201ENST00000450470 217 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AL353752.1-201ENST00000454946 260 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC087884.1-201ENST00000469738 328 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 RN7SL447P-201ENST00000494711 245 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 SCARNA16.4-201ENST00000516956 187 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.715-201ENST00000517082 110 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC063949.1-201ENST00000552900 865 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 RPL23AP84-201ENST00000571193 464 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC116447.1-201ENST00000613153 453 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 TUG1_2.1-201ENST00000614234 87 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 AC109583.2-201ENST00000617367 129 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 MIR6826-201ENST00000617808 98 ntBASIC5.7□□□□□ -1.5
USP3Q9Y6I4 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.7□□□□□ -1.5
USP3Q9Y6I4 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 163 ms