Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC88BA6NC98 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.36□□□□□ -1.87
CCDC88BA6NC98 RPL23AP36-201ENST00000413895 458 ntBASIC3.36□□□□□ -1.87
CCDC88BA6NC98 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC88BA6NC98 AC129850.1-201ENST00000436203 508 ntBASIC3.36□□□□□ -1.87
CCDC88BA6NC98 NDUFB4P6-201ENST00000436819 366 ntBASIC3.36□□□□□ -1.87
CCDC88BA6NC98 snoZ278.1-201ENST00000517059 112 ntBASIC3.36□□□□□ -1.87
CCDC88BA6NC98 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC88BA6NC98 AC023043.2-201ENST00000589678 1026 ntBASIC3.36□□□□□ -1.87
CCDC88BA6NC98 AL391813.2-201ENST00000609113 322 ntBASIC3.36□□□□□ -1.87
CCDC88BA6NC98 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CCDC88BA6NC98 ZNF720P1-201ENST00000562403 1939 ntBASIC3.36□□□□□ -1.87
CCDC88BA6NC98 AL627390.1-201ENST00000396055 340 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 AL138787.1-202ENST00000437804 898 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 CFTRP1-201ENST00000456646 183 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 TTC39CP1-201ENST00000512513 755 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC88BA6NC98 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC88BA6NC98 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC88BA6NC98 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC88BA6NC98 RNU6-661P-201ENST00000362409 107 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 MTCO3P30-201ENST00000426425 670 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 RNA5SP402-201ENST00000517148 110 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 HIGD1AP10-201ENST00000527837 282 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 AC108479.2-201ENST00000617314 601 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.35□□□□□ -1.87
CCDC88BA6NC98 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC88BA6NC98 FAM35CP-201ENST00000554755 2470 ntBASIC3.34□□□□□ -1.87
CCDC88BA6NC98 RNA5SP190-201ENST00000365222 118 ntBASIC3.34□□□□□ -1.88
CCDC88BA6NC98 U8.10-201ENST00000384260 133 ntBASIC3.34□□□□□ -1.88
CCDC88BA6NC98 AL445685.2-201ENST00000422551 342 ntBASIC3.34□□□□□ -1.88
CCDC88BA6NC98 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.34□□□□□ -1.88
CCDC88BA6NC98 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.34□□□□□ -1.88
CCDC88BA6NC98 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.34□□□□□ -1.88
CCDC88BA6NC98 UBE2V2P4-201ENST00000447495 259 ntBASIC3.34□□□□□ -1.88
CCDC88BA6NC98 RN7SKP31-201ENST00000516354 278 ntBASIC3.34□□□□□ -1.88
CCDC88BA6NC98 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.34□□□□□ -1.88
CCDC88BA6NC98 VN1R80P-201ENST00000597126 338 ntBASIC3.34□□□□□ -1.88
CCDC88BA6NC98 SNORA50A-202ENST00000629536 136 ntBASIC3.34□□□□□ -1.88
CCDC88BA6NC98 AL353746.1-201ENST00000566293 6881 ntBASIC3.33□□□□□ -1.88
CCDC88BA6NC98 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC88BA6NC98 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC88BA6NC98 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC88BA6NC98 AC019129.1-201ENST00000403786 261 ntBASIC3.33□□□□□ -1.88
CCDC88BA6NC98 RNU6-321P-201ENST00000410912 106 ntBASIC3.33□□□□□ -1.88
CCDC88BA6NC98 RPL34P26-201ENST00000445636 354 ntBASIC3.33□□□□□ -1.88
CCDC88BA6NC98 AC091179.1-201ENST00000461606 579 ntBASIC3.33□□□□□ -1.88
CCDC88BA6NC98 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC88BA6NC98 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC88BA6NC98 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC88BA6NC98 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
CCDC88BA6NC98 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CCDC88BA6NC98 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CCDC88BA6NC98 MTND4P13-201ENST00000402078 1023 ntBASIC3.32□□□□□ -1.88
CCDC88BA6NC98 TRIAP1P1-201ENST00000427062 225 ntBASIC3.32□□□□□ -1.88
CCDC88BA6NC98 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.32□□□□□ -1.88
CCDC88BA6NC98 AC084768.2-201ENST00000622736 221 ntBASIC3.32□□□□□ -1.88
CCDC88BA6NC98 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
CCDC88BA6NC98 SNORA26.7-201ENST00000391288 122 ntBASIC3.31□□□□□ -1.88
CCDC88BA6NC98 BTBD10P2-201ENST00000404779 676 ntBASIC3.31□□□□□ -1.88
CCDC88BA6NC98 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC88BA6NC98 RPS27P5-201ENST00000444247 244 ntBASIC3.31□□□□□ -1.88
CCDC88BA6NC98 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC88BA6NC98 AC087385.1-201ENST00000475062 312 ntBASIC3.31□□□□□ -1.88
CCDC88BA6NC98 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC88BA6NC98 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC88BA6NC98 AC108729.3-201ENST00000513484 108 ntBASIC3.31□□□□□ -1.88
CCDC88BA6NC98 FAM92A1P1-201ENST00000528023 890 ntBASIC3.31□□□□□ -1.88
CCDC88BA6NC98 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC88BA6NC98 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
CCDC88BA6NC98 DCAF13P3-201ENST00000561147 1334 ntBASIC3.3□□□□□ -1.88
CCDC88BA6NC98 SET-203ENST00000372688 801 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC88BA6NC98 AF274854.1-201ENST00000413236 615 ntBASIC3.3□□□□□ -1.88
CCDC88BA6NC98 AC027673.1-201ENST00000456245 405 ntBASIC3.3□□□□□ -1.88
CCDC88BA6NC98 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC88BA6NC98 MTND5P21-201ENST00000531961 522 ntBASIC3.3□□□□□ -1.88
CCDC88BA6NC98 U6.98-201ENST00000637157 84 ntBASIC3.3□□□□□ -1.88
CCDC88BA6NC98 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.3□□□□□ -1.88
CCDC88BA6NC98 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC88BA6NC98 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC88BA6NC98 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC88BA6NC98 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC88BA6NC98 RNU6-14P-201ENST00000384630 106 ntBASIC3.29□□□□□ -1.88
CCDC88BA6NC98 MIR1294-201ENST00000408503 142 ntBASIC3.29□□□□□ -1.88
CCDC88BA6NC98 RNA5SP270-201ENST00000411361 118 ntBASIC3.29□□□□□ -1.88
CCDC88BA6NC98 AC073310.1-201ENST00000423226 1033 ntBASIC3.29□□□□□ -1.88
CCDC88BA6NC98 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC88BA6NC98 RPL21P2-201ENST00000440049 481 ntBASIC3.29□□□□□ -1.88
CCDC88BA6NC98 RNU6-250P-201ENST00000516958 103 ntBASIC3.29□□□□□ -1.88
CCDC88BA6NC98 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.29□□□□□ -1.88
CCDC88BA6NC98 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC88BA6NC98 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC88BA6NC98 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC88BA6NC98 RNA5SP160-201ENST00000364866 120 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 PTP4A1P1-201ENST00000420539 515 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC88BA6NC98 RPL23AP7-203ENST00000449021 469 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 TRAV31-201ENST00000502780 342 ntBASIC3.28□□□□□ -1.88
CCDC88BA6NC98 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CCDC88BA6NC98 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms