Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 DUXAP3-201ENST00000603616 594 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AL451074.6-201ENST00000608512 729 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AL390240.1-201ENST00000612950 384 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 AC006386.1-201ENST00000619436 415 ntBASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDHGA1Q9Y5H4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC118273.1-201ENST00000525324 3006 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AL356473.1-201ENST00000406203 1408 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC021755.1-201ENST00000559747 1447 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 SNORD9-201ENST00000362566 104 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 Y_RNA.192-201ENST00000363977 102 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 RNU6-1122P-201ENST00000384449 107 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 RNA5SP424-201ENST00000390988 115 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 HMGB3P23-201ENST00000414981 585 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC019178.2-201ENST00000423595 505 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 EZH2P1-201ENST00000431167 291 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 MUPP-201ENST00000438111 566 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 RPL23AP31-201ENST00000456160 467 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC026410.2-201ENST00000460281 156 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC090453.1-201ENST00000495560 436 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 COX7A2P2-201ENST00000505291 250 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 SLC2A13P1-201ENST00000531560 322 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC011611.1-201ENST00000552179 197 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 MIR4298-201ENST00000584380 73 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 AC006116.10-201ENST00000591836 581 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 SCARNA15.3-201ENST00000626315 122 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 SCARNA4.1-201ENST00000628597 123 ntBASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHGA1Q9Y5H4 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 RPL7P26-201ENST00000333817 754 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 SNORA38.1-201ENST00000364172 131 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 RN7SKP53-201ENST00000411337 315 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 ELOCP9-201ENST00000418624 239 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 BX842559.1-201ENST00000419615 532 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 ATP5F1P1-201ENST00000433775 569 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 KCTD9P3-201ENST00000434597 1169 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 SNRPEP4-201ENST00000435815 279 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 RPS17P13-201ENST00000448974 407 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 USP9YP25-201ENST00000457708 443 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AP000563.1-201ENST00000490865 758 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AC079395.1-201ENST00000510981 262 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AC119751.5-201ENST00000514077 770 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 SNRPGP16-201ENST00000533275 226 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AL163153.1-201ENST00000554223 283 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 MTND4P33-201ENST00000556706 766 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AL031176.1-201ENST00000604554 466 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AP003392.5-201ENST00000607857 415 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 MIR486-1-201ENST00000612171 68 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AC004009.2-201ENST00000623016 728 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 CRYM-AS1-204ENST00000637983 556 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 MIR1322-201ENST00000638013 71 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AP000553.6-201ENST00000641242 118 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 AC058791.1-201ENST00000608412 3198 ntBASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PCDHGA1Q9Y5H4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PCDHGA1Q9Y5H4 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.54□□□□□ -1.84
PCDHGA1Q9Y5H4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PCDHGA1Q9Y5H4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
PCDHGA1Q9Y5H4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms