Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 NCAPGP1-201ENST00000505112 1814 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 OR5J1P-201ENST00000313544 939 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 FAM133CP-201ENST00000332869 704 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 Y_RNA.311-201ENST00000365068 96 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 TIMM9P2-201ENST00000419324 266 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AL035410.1-201ENST00000427409 427 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC004022.1-201ENST00000447766 1066 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 RN7SL93P-201ENST00000463035 293 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC118282.1-201ENST00000506408 765 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 HMGB1P28-201ENST00000507778 552 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 MTCYBP37-201ENST00000510642 1133 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC079395.1-201ENST00000510981 262 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 RN7SKP31-201ENST00000516354 278 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 RNU5A-4P-201ENST00000516588 111 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 GTF3AP2-201ENST00000557014 266 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AL512347.1-201ENST00000566420 503 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC103881.1-201ENST00000603476 538 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC136601.2-201ENST00000604356 474 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC006270.3-201ENST00000605967 1036 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 AC092106.3-201ENST00000611308 722 ntBASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.95□□□□□ -1.78
ZNF541Q9H0D2 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 CR383658.2-201ENST00000547576 1525 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC073073.2-201ENST00000609827 2578 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 RNU6-216P-201ENST00000363282 104 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 RNU6-374P-201ENST00000364146 108 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 Y_RNA.408-201ENST00000383987 102 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 RNU1-89P-201ENST00000384592 164 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AL355379.1-201ENST00000405542 640 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 LUZP4P1-201ENST00000415420 344 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 ELOCP9-201ENST00000418624 239 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 BX890604.2-201ENST00000427883 474 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 RPL29P29-201ENST00000448725 423 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 RPL7P18-201ENST00000478965 734 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 FAM172BP-201ENST00000487497 1089 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC023538.1-201ENST00000534576 736 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 HIGD1AP17-201ENST00000554576 276 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC009712.1-201ENST00000564938 316 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 VN1R78P-201ENST00000597393 564 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC083899.3-201ENST00000603413 594 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC107952.2-201ENST00000606048 486 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC078899.5-201ENST00000612475 178 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC004825.2-201ENST00000616634 455 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 AC231657.1-201ENST00000624313 397 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 OR5BR1P-201ENST00000524992 1330 ntBASIC3.94□□□□□ -1.78
ZNF541Q9H0D2 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
ZNF541Q9H0D2 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
ZNF541Q9H0D2 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.93□□□□□ -1.78
ZNF541Q9H0D2 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
ZNF541Q9H0D2 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms