Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TAB3P1-202ENST00000452645 1634 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 Y_RNA.148-201ENST00000363557 117 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 Y_RNA.187-201ENST00000363918 113 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 RNU4-20P-201ENST00000365601 151 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 Y_RNA.557-201ENST00000384680 107 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 RNU2-9P-201ENST00000410194 145 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 RNU6-1304P-201ENST00000411374 106 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 COX6CP17-201ENST00000421389 185 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 RPS15AP9-201ENST00000439856 381 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 RPS24P13-201ENST00000442520 397 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 RPL34P20-201ENST00000442771 351 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AL136380.1-201ENST00000447970 162 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 TRGVB-201ENST00000453257 471 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AL645937.3-201ENST00000453647 936 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 MTCO3P10-201ENST00000455912 772 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 NF1P3-201ENST00000457709 450 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 Y_RNA.635-201ENST00000459041 101 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 RPS26P39-201ENST00000469206 341 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 TRBV8-2-201ENST00000475637 270 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AC006499.2-201ENST00000513470 337 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 RNU6-406P-201ENST00000516470 107 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AC027309.2-201ENST00000520566 192 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 HAUS8P1-201ENST00000549005 542 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 TVP23CP2-201ENST00000571473 623 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AC087783.2-201ENST00000605070 562 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AL022345.1-201ENST00000607292 135 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 AL121612.2-201ENST00000612261 482 ntBASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
CCDC39Q9UFE4 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.52
CCDC39Q9UFE4 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC39Q9UFE4 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC39Q9UFE4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC39Q9UFE4 MAPK10-303ENST00000641324 3959 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 RNU1-20P-201ENST00000363314 162 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 RNU6-209P-201ENST00000384118 107 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC092642.1-201ENST00000392417 425 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 RPS12P24-201ENST00000412619 387 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 CHEK2P3-201ENST00000416118 248 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC092162.1-201ENST00000432828 434 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 PPIAP13-201ENST00000434706 478 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC007547.1-201ENST00000462177 490 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 TTC39CP1-201ENST00000512513 755 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 RN7SKP66-201ENST00000516681 231 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 RNA5SP34-201ENST00000516887 130 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 RNU6-388P-201ENST00000517012 105 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 RNU6-389P-201ENST00000517048 105 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 OR5D15P-201ENST00000531671 942 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC099489.2-201ENST00000574976 260 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 MIR3167-201ENST00000579623 85 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC005357.1-201ENST00000588399 301 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC006116.3-201ENST00000592968 361 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC104687.2-201ENST00000604442 342 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AL354950.2-201ENST00000617939 290 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 MIR6886-201ENST00000619864 61 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC055839.1-201ENST00000634467 498 ntBASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC39Q9UFE4 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC090337.1-201ENST00000579651 2074 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms