Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RNU6-845P-201ENST00000362578 103 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 Y_RNA.166-201ENST00000363730 102 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RNU6-510P-201ENST00000391239 108 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 HDGFP1-201ENST00000405943 252 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RN7SKP221-201ENST00000410420 301 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RN7SKP177-201ENST00000410567 355 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC006509.1-201ENST00000420788 634 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 MTND3P23-201ENST00000431980 347 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 ELOCP23-201ENST00000452014 332 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 SCARNA10-201ENST00000459255 330 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC007547.1-201ENST00000462177 490 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RN7SL57P-201ENST00000493687 290 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RBBP4P6-201ENST00000508098 202 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RNA5SP96-201ENST00000516041 107 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RNA5SP249-201ENST00000516127 99 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 Y_RNA.689-201ENST00000516589 107 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC023050.3-201ENST00000541142 333 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AL121576.1-201ENST00000556055 276 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RPL21P7-201ENST00000557463 483 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC006270.2-201ENST00000578523 652 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 RPL29P33-201ENST00000587474 316 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC013553.2-201ENST00000604244 589 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AL670379.4-201ENST00000605279 254 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AL158032.1-201ENST00000605401 106 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AC019193.2-201ENST00000610012 634 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 MIR6849-201ENST00000618543 69 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 AP000542.2-201ENST00000623199 6179 ntBASIC4.26□□□□□ -1.73
CLRN3Q8NCR9 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL133412.1-201ENST00000380194 2992 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 RNU1-108P-201ENST00000362556 161 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 SNORA31-201ENST00000362607 130 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 Y_RNA.263-201ENST00000364659 114 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AP000580.1-201ENST00000404439 358 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 RN7SKP29-201ENST00000410957 272 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 CHEK2P3-201ENST00000416118 248 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL591704.1-201ENST00000432574 275 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL022324.2-201ENST00000434827 780 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 TXNP1-201ENST00000441872 371 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 PRDX3P3-201ENST00000447765 522 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL450023.1-201ENST00000450868 751 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL133445.1-201ENST00000467051 452 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 RPS26P39-201ENST00000469206 341 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 RPL7P19-201ENST00000469948 618 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 RN7SL817P-201ENST00000480777 288 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC093270.2-201ENST00000486157 792 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC024558.1-201ENST00000505008 528 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 OR51K1P-201ENST00000510214 950 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 138.5 ms