Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC88BA6NC98 AC135999.1-201ENST00000478962 479 ntBASIC3.51□□□□□ -1.85
CCDC88BA6NC98 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC88BA6NC98 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC88BA6NC98 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC88BA6NC98 MIR583-201ENST00000384846 75 ntBASIC3.5□□□□□ -1.85
CCDC88BA6NC98 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC88BA6NC98 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.5□□□□□ -1.85
CCDC88BA6NC98 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC88BA6NC98 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC88BA6NC98 AC009237.8-201ENST00000445492 379 ntBASIC3.5□□□□□ -1.85
CCDC88BA6NC98 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC88BA6NC98 OR11H5P-201ENST00000554039 926 ntBASIC3.5□□□□□ -1.85
CCDC88BA6NC98 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88BA6NC98 MIR3670-2-201ENST00000582974 65 ntBASIC3.5□□□□□ -1.85
CCDC88BA6NC98 MIR3670-1-201ENST00000584160 65 ntBASIC3.5□□□□□ -1.85
CCDC88BA6NC98 MIR3670-3-201ENST00000584855 65 ntBASIC3.5□□□□□ -1.85
CCDC88BA6NC98 MIR3670-4-201ENST00000612260 65 ntBASIC3.5□□□□□ -1.85
CCDC88BA6NC98 MIR7111-201ENST00000619751 72 ntBASIC3.5□□□□□ -1.85
CCDC88BA6NC98 AC092650.2-201ENST00000619984 902 ntBASIC3.5□□□□□ -1.85
CCDC88BA6NC98 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC88BA6NC98 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 SNORD6-201ENST00000365444 73 ntBASIC3.49□□□□□ -1.85
CCDC88BA6NC98 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 AL358453.1-201ENST00000422522 250 ntBASIC3.49□□□□□ -1.85
CCDC88BA6NC98 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 AP000852.1-201ENST00000472460 573 ntBASIC3.49□□□□□ -1.85
CCDC88BA6NC98 NDUFB4P9-201ENST00000511646 388 ntBASIC3.49□□□□□ -1.85
CCDC88BA6NC98 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 SNRPGP19-201ENST00000603826 189 ntBASIC3.49□□□□□ -1.85
CCDC88BA6NC98 AL627309.6-201ENST00000606857 840 ntBASIC3.49□□□□□ -1.85
CCDC88BA6NC98 AC002064.3-201ENST00000623448 346 ntBASIC3.49□□□□□ -1.85
CCDC88BA6NC98 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC88BA6NC98 MIR9-3-201ENST00000385084 90 ntBASIC3.48□□□□□ -1.85
CCDC88BA6NC98 AC008173.1-201ENST00000418901 264 ntBASIC3.48□□□□□ -1.85
CCDC88BA6NC98 YWHAZP7-201ENST00000436906 631 ntBASIC3.48□□□□□ -1.85
CCDC88BA6NC98 AC233279.1-201ENST00000455300 423 ntBASIC3.48□□□□□ -1.85
CCDC88BA6NC98 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.48□□□□□ -1.85
CCDC88BA6NC98 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC88BA6NC98 TRAV11-201ENST00000539512 339 ntBASIC3.48□□□□□ -1.85
CCDC88BA6NC98 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC88BA6NC98 AC004486.1-201ENST00000546846 233 ntBASIC3.48□□□□□ -1.85
CCDC88BA6NC98 RPAP2P1-201ENST00000603626 1168 ntBASIC3.48□□□□□ -1.85
CCDC88BA6NC98 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC88BA6NC98 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC88BA6NC98 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.48□□□□□ -1.85
CCDC88BA6NC98 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC88BA6NC98 GNAI2P1-201ENST00000541815 315 ntBASIC3.47□□□□□ -1.85
CCDC88BA6NC98 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC88BA6NC98 AL356575.1-201ENST00000603008 283 ntBASIC3.47□□□□□ -1.85
CCDC88BA6NC98 AC017076.1-201ENST00000607613 578 ntBASIC3.47□□□□□ -1.85
CCDC88BA6NC98 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC88BA6NC98 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC88BA6NC98 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC88BA6NC98 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC88BA6NC98 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC88BA6NC98 VN1R48P-201ENST00000448149 1036 ntBASIC3.47□□□□□ -1.85
CCDC88BA6NC98 AP000926.1-201ENST00000479573 241 ntBASIC3.47□□□□□ -1.85
CCDC88BA6NC98 RPS29P11-201ENST00000496507 171 ntBASIC3.47□□□□□ -1.85
CCDC88BA6NC98 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC88BA6NC98 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC88BA6NC98 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.85
CCDC88BA6NC98 MTND5P7-201ENST00000413558 1798 ntBASIC3.46□□□□□ -1.86
CCDC88BA6NC98 U3.37-201ENST00000408528 213 ntBASIC3.46□□□□□ -1.86
CCDC88BA6NC98 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC88BA6NC98 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC88BA6NC98 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC88BA6NC98 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC88BA6NC98 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC88BA6NC98 MIR5089-201ENST00000580047 84 ntBASIC3.46□□□□□ -1.86
CCDC88BA6NC98 AP001486.2-201ENST00000561652 5113 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC88BA6NC98 Y_RNA.226-201ENST00000364337 114 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 Y_RNA.338-201ENST00000365320 114 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 U8.9-201ENST00000365667 134 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 NCSTNP1-201ENST00000406229 144 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC88BA6NC98 AC017007.3-201ENST00000479865 435 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 AC132942.1-201ENST00000486753 483 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 RNA5SP182-201ENST00000516064 82 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 IGHVIII-5-1-201ENST00000523059 99 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 AC011611.5-201ENST00000552477 578 ntBASIC3.45□□□□□ -1.86
CCDC88BA6NC98 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC88BA6NC98 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC88BA6NC98 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.45□□□□□ -1.86
CCDC88BA6NC98 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC88BA6NC98 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC3.45□□□□□ -1.86
CCDC88BA6NC98 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
CCDC88BA6NC98 NSRP1P1-201ENST00000444067 1693 ntBASIC3.44□□□□□ -1.86
CCDC88BA6NC98 AC080128.1-201ENST00000474389 1917 ntBASIC3.44□□□□□ -1.86
CCDC88BA6NC98 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.44□□□□□ -1.86
CCDC88BA6NC98 Z82205.1-201ENST00000428456 297 ntBASIC3.44□□□□□ -1.86
CCDC88BA6NC98 ATP5F1P1-201ENST00000433775 569 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms