Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR4769-201ENST00000584126 77 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AP004372.1-201ENST00000604842 844 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AC046143.2-201ENST00000609789 160 ntBASIC2.25□□□□□ -2.05
SCN3AQ9NY46 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.25□□□□□ -2.05
SCN3AQ9NY46 AC002546.1-201ENST00000588041 2504 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 SNORA36C-201ENST00000384289 132 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 RN7SKP140-201ENST00000411196 284 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 DPH3P2-201ENST00000422618 250 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 HSD52-202ENST00000436225 772 ntTSL 3 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 HMGN2P21-201ENST00000447764 270 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 TRBV12-1-201ENST00000479785 344 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC112673.1-201ENST00000513168 575 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 RN7SKP24-201ENST00000515888 284 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC078899.3-201ENST00000599065 212 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 MIR6766-201ENST00000622641 72 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 U8.8-201ENST00000365399 135 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 LSM5-206ENST00000409987 504 ntTSL 5 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 RAD23BP2-201ENST00000416003 1207 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 MTCO1P43-201ENST00000431831 488 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 RN7SKP244-201ENST00000516513 307 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC106734.1-201ENST00000568646 663 ntBASIC2.24□□□□□ -2.05
SCN3AQ9NY46 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.24□□□□□ -2.05
SCN3AQ9NY46 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 MIR518C-201ENST00000384822 101 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 HMGB1P13-201ENST00000406019 642 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 RPL26P37-201ENST00000411983 438 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AC009961.3-201ENST00000449832 765 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 NPM1P13-201ENST00000452663 865 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AC008413.1-201ENST00000511864 177 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AC026412.2-201ENST00000512270 1075 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AC123904.3-201ENST00000547218 814 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 OR4T1P-201ENST00000554933 911 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AC064859.1-201ENST00000624741 174 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 AC138649.5-201ENST00000637456 137 ntBASIC2.23□□□□□ -2.05
SCN3AQ9NY46 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.23□□□□□ -2.05
SCN3AQ9NY46 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 SNORA7.2-201ENST00000364446 145 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 HMGB1P10-201ENST00000395823 563 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 RN7SKP284-201ENST00000411002 343 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 SETP8-201ENST00000435341 628 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 RPS27AP1-201ENST00000475545 471 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 HSPE1P6-201ENST00000479457 291 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC093755.1-201ENST00000512950 1023 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 RNA5SP468-201ENST00000516782 93 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 OR4R2P-201ENST00000530815 597 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC004486.1-201ENST00000546846 233 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 CYP3A51P-201ENST00000633513 256 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC013404.1-201ENST00000413068 249 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms