Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC119751.5-201ENST00000514077 770 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 RNU4-60P-201ENST00000517239 135 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 AC105185.1-201ENST00000518705 535 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 AC007536.1-201ENST00000533382 349 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 HIGD1AP17-201ENST00000554576 276 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 SULT1C2P1-202ENST00000562418 459 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 MTCYBP28-201ENST00000566728 1132 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 AC091946.2-201ENST00000606105 291 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 AC068057.2-201ENST00000624047 895 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 AC017037.3-201ENST00000625016 472 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 LRRC77P-213ENST00000637727 880 ntBASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.34□□□□□ -1.87
CCDC28BQ9BUN5 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 MTND5P7-201ENST00000413558 1798 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC117529.2-201ENST00000512159 2068 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 SPRR2C-201ENST00000290702 219 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 RPL7P26-201ENST00000333817 754 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 MIR372-201ENST00000362225 67 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 RNU6-216P-201ENST00000363282 104 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 MIR649-201ENST00000384843 97 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 RSL24D1P4-201ENST00000400938 484 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 RN7SKP58-201ENST00000411010 305 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC096632.1-201ENST00000427395 310 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 HMGB3P11-201ENST00000440127 604 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC104978.1-201ENST00000449387 391 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 snoU13.7-201ENST00000459220 104 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC091564.1-201ENST00000464563 479 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 MTND1P16-201ENST00000465177 898 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC146507.1-201ENST00000468335 354 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC087879.1-201ENST00000474343 374 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 PTGES3P3-201ENST00000511479 482 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC026402.1-201ENST00000513642 170 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC093853.1-201ENST00000515689 483 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 MTCO1P49-201ENST00000523429 802 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AL158042.1-201ENST00000605338 460 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC004908.3-201ENST00000610248 625 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 MIR7641-1-201ENST00000627518 61 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AC093831.2-201ENST00000624393 3427 ntBASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC28BQ9BUN5 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 U3.6-201ENST00000363622 211 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 Y_RNA.408-201ENST00000383987 102 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 RNU6-356P-201ENST00000384140 107 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 AL031121.1-201ENST00000406553 254 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 METTL5-204ENST00000409340 472 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 AL133384.1-201ENST00000412744 351 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 DPPA2P1-201ENST00000428060 556 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 RPL31P54-201ENST00000429803 370 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 RPL36P19-201ENST00000430744 301 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 MTND2P20-201ENST00000440805 661 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 AL662791.1-201ENST00000441992 928 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 HSFY6P-201ENST00000445573 403 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 MTCO1P48-201ENST00000448024 1096 ntBASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC28BQ9BUN5 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms