Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA9P31269 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA9P31269 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXA9P31269 RNU6-50P-201ENST00000362356 103 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXA9P31269 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
HOXA9P31269 UBE2V1P11-201ENST00000411559 285 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA9P31269 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA9P31269 MTCYBP24-201ENST00000420387 1106 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA9P31269 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA9P31269 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA9P31269 RPS24P13-201ENST00000442520 397 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA9P31269 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA9P31269 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA9P31269 AC093392.2-201ENST00000450682 337 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA9P31269 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA9P31269 PRELID3BP6-201ENST00000503839 571 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
HOXA9P31269 HIGD1AP13-201ENST00000509878 289 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXA9P31269 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA9P31269 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA9P31269 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXA9P31269 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA9P31269 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA9P31269 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXA9P31269 AC027104.1-201ENST00000563702 681 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 AC021851.1-201ENST00000608537 1082 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 AC112503.2-201ENST00000609005 552 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 AC103798.2-201ENST00000624292 632 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA9P31269 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXA9P31269 AL645568.2-201ENST00000432815 1337 ntBASIC3.14□□□□□ -1.91
HOXA9P31269 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA9P31269 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA9P31269 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA9P31269 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA9P31269 AC103988.1-201ENST00000566382 2177 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HOXA9P31269 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA9P31269 ENSAP3-201ENST00000312710 333 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA9P31269 AL583834.1-201ENST00000406943 343 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 MTATP6P31-201ENST00000406985 692 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA9P31269 RPL7P46-201ENST00000425129 740 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AC000041.1-201ENST00000439655 175 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 HMGN1P5-201ENST00000448591 263 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA9P31269 Z99714.1-201ENST00000450463 807 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 snoU13.7-201ENST00000459220 104 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 RPL21P18-201ENST00000469899 480 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 ST13P14-201ENST00000474095 734 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA9P31269 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA9P31269 MTCO3P27-201ENST00000514397 196 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AP003355.1-201ENST00000518956 587 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AC109635.4-202ENST00000531666 412 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.13□□□□□ -1.91
HOXA9P31269 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA9P31269 AC124283.4-201ENST00000581815 456 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA9P31269 AC091488.1-201ENST00000604239 660 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AC004832.5-201ENST00000608677 401 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AC096586.1-201ENST00000610267 561 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 STMN1P1-201ENST00000617809 440 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AL109620.1-201ENST00000618738 1197 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AC024595.1-201ENST00000623088 387 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA9P31269 AC132825.7-201ENST00000638744 335 ntBASIC3.13□□□□□ -1.91
HOXA9P31269 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HOXA9P31269 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
HOXA9P31269 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.13□□□□□ -1.91
HOXA9P31269 ELL2P4-201ENST00000446870 1376 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AC073055.1-201ENST00000456901 1621 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HOXA9P31269 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA9P31269 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA9P31269 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA9P31269 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA9P31269 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA9P31269 DEFB109C-201ENST00000382575 264 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 DEFB109B-201ENST00000382656 264 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 RNU6-1176P-201ENST00000390955 107 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AL035405.1-201ENST00000400795 710 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AL121972.1-201ENST00000402023 252 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA9P31269 AC005517.2-201ENST00000424673 553 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AC093422.3-201ENST00000428506 305 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA9P31269 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA9P31269 AL096803.2-201ENST00000450032 677 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AL035407.2-201ENST00000454090 378 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms