Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 RBM17P1-201ENST00000453646 1190 ntBASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 Z85996.1-201ENST00000494644 937 ntBASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 AC130371.2-201ENST00000619443 611 ntBASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD1Q96NR3 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD1Q96NR3 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PTCHD1Q96NR3 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PTCHD1Q96NR3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTCHD1Q96NR3 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.08■□□□□ 0.49
PTCHD1Q96NR3 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 BX088651.1-201ENST00000540551 451 ntBASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD1Q96NR3 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 FAM207BP-201ENST00000447172 505 ntBASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 AC091390.4-202ENST00000476426 537 ntBASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
PTCHD1Q96NR3 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 AC008040.2-201ENST00000461049 708 ntBASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms