Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TTC28Q96AY4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TTC28Q96AY4 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TTC28Q96AY4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TTC28Q96AY4 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 AC034105.1-201ENST00000563488 319 ntBASIC19.54■□□□□ 0.72
TTC28Q96AY4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
TTC28Q96AY4 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.54■□□□□ 0.72
TTC28Q96AY4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TTC28Q96AY4 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TTC28Q96AY4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TTC28Q96AY4 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.53■□□□□ 0.72
TTC28Q96AY4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TTC28Q96AY4 AL096865.1-201ENST00000606796 927 ntBASIC19.53■□□□□ 0.72
TTC28Q96AY4 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
TTC28Q96AY4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TTC28Q96AY4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.53■□□□□ 0.72
TTC28Q96AY4 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TTC28Q96AY4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.52■□□□□ 0.72
TTC28Q96AY4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
TTC28Q96AY4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.52■□□□□ 0.72
TTC28Q96AY4 AL160286.2-201ENST00000567150 934 ntBASIC19.52■□□□□ 0.72
TTC28Q96AY4 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.52■□□□□ 0.72
TTC28Q96AY4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TTC28Q96AY4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TTC28Q96AY4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TTC28Q96AY4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.52■□□□□ 0.72
TTC28Q96AY4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.52■□□□□ 0.72
TTC28Q96AY4 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.52■□□□□ 0.72
TTC28Q96AY4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.52■□□□□ 0.72
TTC28Q96AY4 BNIP3P18-201ENST00000593976 575 ntBASIC19.52■□□□□ 0.72
TTC28Q96AY4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.52■□□□□ 0.72
TTC28Q96AY4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TTC28Q96AY4 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.52■□□□□ 0.71
TTC28Q96AY4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TTC28Q96AY4 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TTC28Q96AY4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TTC28Q96AY4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
TTC28Q96AY4 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
TTC28Q96AY4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
TTC28Q96AY4 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 RPS2P1-201ENST00000434010 821 ntBASIC19.51■□□□□ 0.71
TTC28Q96AY4 AC007274.1-201ENST00000439805 662 ntBASIC19.51■□□□□ 0.71
TTC28Q96AY4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 AL645939.2-201ENST00000427340 991 ntBASIC19.51■□□□□ 0.71
TTC28Q96AY4 CNN2P11-201ENST00000429351 262 ntBASIC19.51■□□□□ 0.71
TTC28Q96AY4 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 AC106028.4-201ENST00000614509 607 ntBASIC19.51■□□□□ 0.71
TTC28Q96AY4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TTC28Q96AY4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 KRT8P11-201ENST00000409686 1436 ntBASIC19.51■□□□□ 0.71
TTC28Q96AY4 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.51■□□□□ 0.71
TTC28Q96AY4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.5■□□□□ 0.71
TTC28Q96AY4 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.5■□□□□ 0.71
TTC28Q96AY4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms