Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AL161938.1-201ENST00000569833 2180 ntBASIC18.78■□□□□ 0.6
VRK3Q8IV63 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.78■□□□□ 0.6
VRK3Q8IV63 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VRK3Q8IV63 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VRK3Q8IV63 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VRK3Q8IV63 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VRK3Q8IV63 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VRK3Q8IV63 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VRK3Q8IV63 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VRK3Q8IV63 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VRK3Q8IV63 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 AC004951.3-201ENST00000418645 1148 ntBASIC18.77■□□□□ 0.6
VRK3Q8IV63 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 AC011298.2-201ENST00000617989 482 ntBASIC18.77■□□□□ 0.6
VRK3Q8IV63 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.77■□□□□ 0.6
VRK3Q8IV63 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VRK3Q8IV63 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VRK3Q8IV63 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.77■□□□□ 0.59
VRK3Q8IV63 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.77■□□□□ 0.59
VRK3Q8IV63 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 AC026471.5-201ENST00000615068 467 ntBASIC18.76■□□□□ 0.59
VRK3Q8IV63 AC130371.2-201ENST00000619443 611 ntBASIC18.76■□□□□ 0.59
VRK3Q8IV63 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
VRK3Q8IV63 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 IRX1P1-201ENST00000438849 1838 ntBASIC18.76■□□□□ 0.59
VRK3Q8IV63 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VRK3Q8IV63 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 AC116562.2-201ENST00000507042 360 ntBASIC18.75■□□□□ 0.59
VRK3Q8IV63 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 REXO1L10P-201ENST00000615707 1290 ntBASIC18.75■□□□□ 0.59
VRK3Q8IV63 REXO1L12P-201ENST00000622156 912 ntBASIC18.75■□□□□ 0.59
VRK3Q8IV63 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.75■□□□□ 0.59
VRK3Q8IV63 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VRK3Q8IV63 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 KRT8P11-201ENST00000409686 1436 ntBASIC18.74■□□□□ 0.59
VRK3Q8IV63 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
VRK3Q8IV63 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 AC087289.5-201ENST00000586076 3175 ntBASIC18.74■□□□□ 0.59
VRK3Q8IV63 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VRK3Q8IV63 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms