Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 TK1-205ENST00000590862 642 ntTSL 3 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 AC120114.3-201ENST00000611923 658 ntBASIC13.37□□□□□ -0.27
CSMD3Q7Z407 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 PMS2P1-201ENST00000431037 1228 ntBASIC13.36□□□□□ -0.27
CSMD3Q7Z407 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 LINC02084-201ENST00000606069 1096 ntBASIC13.36□□□□□ -0.27
CSMD3Q7Z407 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 AP001271.2-201ENST00000624018 1556 ntBASIC13.36□□□□□ -0.27
CSMD3Q7Z407 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 MIR662-201ENST00000384847 95 ntBASIC13.36□□□□□ -0.27
CSMD3Q7Z407 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 LINC00565-201ENST00000562710 2331 ntBASIC13.36□□□□□ -0.27
CSMD3Q7Z407 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 MIR574-201ENST00000385209 96 ntBASIC13.36□□□□□ -0.27
CSMD3Q7Z407 SEC1P-202ENST00000473944 940 ntBASIC13.36□□□□□ -0.27
CSMD3Q7Z407 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 CIB2-208ENST00000560618 804 ntTSL 2 BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CSMD3Q7Z407 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 KRT16P4-201ENST00000453883 522 ntBASIC13.35□□□□□ -0.27
CSMD3Q7Z407 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 AC004870.1-201ENST00000315132 882 ntBASIC13.35□□□□□ -0.27
CSMD3Q7Z407 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 AP005901.3-202ENST00000581653 237 ntBASIC13.35□□□□□ -0.27
CSMD3Q7Z407 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 PENK-208ENST00000523051 772 ntTSL 5 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CSMD3Q7Z407 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 TOB2P1-201ENST00000469761 992 ntBASIC13.34□□□□□ -0.27
CSMD3Q7Z407 SLC25A1P1-201ENST00000528351 927 ntBASIC13.34□□□□□ -0.27
CSMD3Q7Z407 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 BX640515.1-201ENST00000617215 977 ntBASIC13.34□□□□□ -0.27
CSMD3Q7Z407 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms