Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 AC022898.2-201ENST00000616822 1312 ntBASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 BX119927.1-201ENST00000636596 1552 ntBASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 TMEM179-206ENST00000616017 1645 ntBASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 AP002469.2-201ENST00000531724 424 ntBASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 AL160237.2-201ENST00000556165 472 ntBASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 GXYLT1P4-201ENST00000613576 1192 ntBASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CSPG4Q6UVK1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 AC016734.2-201ENST00000624325 1377 ntBASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 DET1-207ENST00000564406 2315 ntTSL 2 BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CSPG4Q6UVK1 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 AL645929.1-201ENST00000420084 975 ntBASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 FGF14-AS2-201ENST00000606448 1074 ntBASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 AC092329.2-201ENST00000598402 547 ntBASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 AC092667.1-201ENST00000434301 2586 ntBASIC15.8■□□□□ 0.12
CSPG4Q6UVK1 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 HLA-F-220ENST00000434407 884 ntBASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms