Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 COPE-211ENST00000600932 1144 ntTSL 5 BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 RNA5SP415-201ENST00000517246 115 ntBASIC10.53□□□□□ -0.72
UBR4Q5T4S7 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC10.53□□□□□ -0.72
UBR4Q5T4S7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 AC091607.1-201ENST00000490318 1060 ntBASIC10.52□□□□□ -0.72
UBR4Q5T4S7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 AC003101.2-201ENST00000612557 442 ntBASIC10.52□□□□□ -0.72
UBR4Q5T4S7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC10.52□□□□□ -0.72
UBR4Q5T4S7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 AL139400.1-201ENST00000366220 510 ntBASIC10.52□□□□□ -0.73
UBR4Q5T4S7 AC087641.1-201ENST00000557561 1021 ntBASIC10.52□□□□□ -0.73
UBR4Q5T4S7 AC145285.3-201ENST00000564603 959 ntBASIC10.52□□□□□ -0.73
UBR4Q5T4S7 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 SNX1-214ENST00000625244 324 ntTSL 5 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 AL117328.2-201ENST00000624617 1940 ntBASIC10.52□□□□□ -0.73
UBR4Q5T4S7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 NMU-203ENST00000507338 658 ntTSL 3 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 AC012640.2-201ENST00000561606 901 ntBASIC10.52□□□□□ -0.73
UBR4Q5T4S7 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC10.52□□□□□ -0.73
UBR4Q5T4S7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 AC069262.1-201ENST00000539058 672 ntBASIC10.51□□□□□ -0.73
UBR4Q5T4S7 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 BNIP3P18-201ENST00000593976 575 ntBASIC10.51□□□□□ -0.73
UBR4Q5T4S7 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 AC005829.1-201ENST00000570002 483 ntBASIC10.51□□□□□ -0.73
UBR4Q5T4S7 AC027612.4-201ENST00000605371 583 ntBASIC10.51□□□□□ -0.73
UBR4Q5T4S7 IGHV3-41-201ENST00000613121 348 ntBASIC10.51□□□□□ -0.73
UBR4Q5T4S7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
UBR4Q5T4S7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms