Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AP001271.2-201ENST00000624018 1556 ntBASIC20.39■□□□□ 0.85
CHD9Q3L8U1 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 KRT8P26-201ENST00000534154 1276 ntBASIC20.39■□□□□ 0.85
CHD9Q3L8U1 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 AC024243.1-201ENST00000609234 778 ntBASIC20.39■□□□□ 0.85
CHD9Q3L8U1 AL117328.2-201ENST00000624617 1940 ntBASIC20.39■□□□□ 0.85
CHD9Q3L8U1 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 REXO1L6P-202ENST00000619970 1078 ntBASIC20.38■□□□□ 0.85
CHD9Q3L8U1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 FOSL1P1-201ENST00000511041 816 ntBASIC20.38■□□□□ 0.85
CHD9Q3L8U1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CHD9Q3L8U1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 MIR662-201ENST00000384847 95 ntBASIC20.37■□□□□ 0.85
CHD9Q3L8U1 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.37■□□□□ 0.85
CHD9Q3L8U1 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHD9Q3L8U1 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 SAPCD2P3-201ENST00000455031 850 ntBASIC20.36■□□□□ 0.85
CHD9Q3L8U1 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 AC138894.3-201ENST00000603787 634 ntBASIC20.36■□□□□ 0.85
CHD9Q3L8U1 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHD9Q3L8U1 TOB2P1-201ENST00000469761 992 ntBASIC20.36■□□□□ 0.85
CHD9Q3L8U1 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 AL590627.1-203ENST00000421194 1026 ntBASIC20.35■□□□□ 0.85
CHD9Q3L8U1 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 RNF126P1-202ENST00000569893 925 ntBASIC20.35■□□□□ 0.85
CHD9Q3L8U1 AC079602.3-201ENST00000623931 403 ntBASIC20.35■□□□□ 0.85
CHD9Q3L8U1 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHD9Q3L8U1 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.34■□□□□ 0.85
CHD9Q3L8U1 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.34■□□□□ 0.85
CHD9Q3L8U1 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms