Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
PRKDCP78527 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.92□□□□□ -0.18
PRKDCP78527 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
PRKDCP78527 AC211486.1-202ENST00000416371 468 ntBASIC13.92□□□□□ -0.18
PRKDCP78527 AC211476.1-201ENST00000503899 468 ntBASIC13.92□□□□□ -0.18
PRKDCP78527 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
PRKDCP78527 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.92□□□□□ -0.18
PRKDCP78527 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.92□□□□□ -0.18
PRKDCP78527 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
PRKDCP78527 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC13.92□□□□□ -0.18
PRKDCP78527 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
PRKDCP78527 ME2-208ENST00000638937 2471 ntTSL 5 BASIC13.91□□□□□ -0.18
PRKDCP78527 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.91□□□□□ -0.18
PRKDCP78527 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
PRKDCP78527 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC13.91□□□□□ -0.18
PRKDCP78527 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC13.91□□□□□ -0.18
PRKDCP78527 AC104109.2-201ENST00000602919 1418 ntBASIC13.91□□□□□ -0.18
PRKDCP78527 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PRKDCP78527 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PRKDCP78527 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC13.91□□□□□ -0.18
PRKDCP78527 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.91□□□□□ -0.18
PRKDCP78527 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.91□□□□□ -0.18
PRKDCP78527 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC13.91□□□□□ -0.18
PRKDCP78527 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.91□□□□□ -0.18
PRKDCP78527 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC13.91□□□□□ -0.18
PRKDCP78527 Z69720.1-201ENST00000601483 472 ntBASIC13.91□□□□□ -0.18
PRKDCP78527 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC13.91□□□□□ -0.18
PRKDCP78527 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PRKDCP78527 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PRKDCP78527 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PRKDCP78527 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PRKDCP78527 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC13.91□□□□□ -0.18
PRKDCP78527 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PRKDCP78527 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.91□□□□□ -0.18
PRKDCP78527 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
PRKDCP78527 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
PRKDCP78527 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PRKDCP78527 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC13.9□□□□□ -0.18
PRKDCP78527 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
PRKDCP78527 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC13.9□□□□□ -0.18
PRKDCP78527 MED15P5-201ENST00000423150 992 ntBASIC13.9□□□□□ -0.18
PRKDCP78527 HNRNPDP1-201ENST00000439535 754 ntBASIC13.9□□□□□ -0.18
PRKDCP78527 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.9□□□□□ -0.18
PRKDCP78527 AC034105.1-201ENST00000563488 319 ntBASIC13.9□□□□□ -0.18
PRKDCP78527 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC13.9□□□□□ -0.18
PRKDCP78527 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
PRKDCP78527 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
PRKDCP78527 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC13.9□□□□□ -0.18
PRKDCP78527 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 BUB3-202ENST00000368859 667 ntTSL 3 BASIC13.9□□□□□ -0.18
PRKDCP78527 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.9□□□□□ -0.18
PRKDCP78527 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC13.9□□□□□ -0.18
PRKDCP78527 KRT8P11-201ENST00000409686 1436 ntBASIC13.9□□□□□ -0.18
PRKDCP78527 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC13.9□□□□□ -0.18
PRKDCP78527 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC13.9□□□□□ -0.18
PRKDCP78527 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
PRKDCP78527 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 NSUN5P1-202ENST00000421140 1535 ntBASIC13.9□□□□□ -0.18
PRKDCP78527 NSUN5P2-203ENST00000457352 1529 ntBASIC13.9□□□□□ -0.18
PRKDCP78527 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC13.9□□□□□ -0.18
PRKDCP78527 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
PRKDCP78527 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.9□□□□□ -0.18
PRKDCP78527 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
PRKDCP78527 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PRKDCP78527 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
PRKDCP78527 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
PRKDCP78527 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
PRKDCP78527 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
PRKDCP78527 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
PRKDCP78527 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
PRKDCP78527 DPP3P2-201ENST00000416030 1696 ntBASIC13.89□□□□□ -0.19
PRKDCP78527 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
PRKDCP78527 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PRKDCP78527 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
PRKDCP78527 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
PRKDCP78527 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
PRKDCP78527 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC13.89□□□□□ -0.19
PRKDCP78527 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
PRKDCP78527 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
PRKDCP78527 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.89□□□□□ -0.19
PRKDCP78527 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.89□□□□□ -0.19
PRKDCP78527 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.89□□□□□ -0.19
PRKDCP78527 AC099336.1-202ENST00000602961 463 ntBASIC13.89□□□□□ -0.19
PRKDCP78527 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PRKDCP78527 GPAT2P1-201ENST00000444924 1672 ntBASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms