Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
PEX3P56589 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PEX3P56589 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.16■□□□□ 0.98
PEX3P56589 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PEX3P56589 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.15■□□□□ 0.98
PEX3P56589 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
PEX3P56589 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.15■□□□□ 0.98
PEX3P56589 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.15■□□□□ 0.98
PEX3P56589 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
PEX3P56589 KRT8P11-201ENST00000409686 1436 ntBASIC21.15■□□□□ 0.98
PEX3P56589 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.15■□□□□ 0.98
PEX3P56589 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.15■□□□□ 0.98
PEX3P56589 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PEX3P56589 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PEX3P56589 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
PEX3P56589 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PEX3P56589 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.15■□□□□ 0.98
PEX3P56589 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.15■□□□□ 0.98
PEX3P56589 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PEX3P56589 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PEX3P56589 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.15■□□□□ 0.98
PEX3P56589 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.15■□□□□ 0.98
PEX3P56589 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
PEX3P56589 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.15■□□□□ 0.98
PEX3P56589 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PEX3P56589 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.15■□□□□ 0.98
PEX3P56589 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.15■□□□□ 0.98
PEX3P56589 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
PEX3P56589 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.15■□□□□ 0.98
PEX3P56589 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PEX3P56589 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PEX3P56589 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PEX3P56589 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
PEX3P56589 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
PEX3P56589 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.14■□□□□ 0.97
PEX3P56589 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.14■□□□□ 0.97
PEX3P56589 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 CRYGFP-201ENST00000418459 633 ntBASIC21.14■□□□□ 0.97
PEX3P56589 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.14■□□□□ 0.97
PEX3P56589 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.14■□□□□ 0.97
PEX3P56589 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PEX3P56589 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.14■□□□□ 0.97
PEX3P56589 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.14■□□□□ 0.97
PEX3P56589 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.14■□□□□ 0.97
PEX3P56589 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
PEX3P56589 TEX21P-204ENST00000641479 1693 ntBASIC21.14■□□□□ 0.97
PEX3P56589 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PEX3P56589 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.13■□□□□ 0.97
PEX3P56589 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PEX3P56589 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PEX3P56589 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.13■□□□□ 0.97
PEX3P56589 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 TSPY23P-201ENST00000440136 739 ntBASIC21.13■□□□□ 0.97
PEX3P56589 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.13■□□□□ 0.97
PEX3P56589 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PEX3P56589 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.13■□□□□ 0.97
PEX3P56589 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PEX3P56589 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PEX3P56589 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
PEX3P56589 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.12■□□□□ 0.97
PEX3P56589 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.12■□□□□ 0.97
PEX3P56589 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.12■□□□□ 0.97
PEX3P56589 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 MMP23A-201ENST00000234610 1017 ntBASIC21.12■□□□□ 0.97
PEX3P56589 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.12■□□□□ 0.97
PEX3P56589 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
PEX3P56589 FITM1-202ENST00000559294 800 ntBASIC21.12■□□□□ 0.97
PEX3P56589 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
PEX3P56589 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PEX3P56589 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.12■□□□□ 0.97
PEX3P56589 AC005332.7-201ENST00000614046 2005 ntBASIC21.12■□□□□ 0.97
PEX3P56589 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms