Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC063952.2-201ENST00000498792 1227 ntBASIC20.53■□□□□ 0.88
VCPP55072 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.53■□□□□ 0.88
VCPP55072 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.53■□□□□ 0.88
VCPP55072 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCPP55072 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCPP55072 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCPP55072 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCPP55072 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCPP55072 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.53■□□□□ 0.88
VCPP55072 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.52■□□□□ 0.88
VCPP55072 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCPP55072 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.52■□□□□ 0.88
VCPP55072 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCPP55072 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCPP55072 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.52■□□□□ 0.88
VCPP55072 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VCPP55072 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.52■□□□□ 0.88
VCPP55072 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.52■□□□□ 0.88
VCPP55072 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.52■□□□□ 0.88
VCPP55072 CR392000.1-201ENST00000624770 1228 ntBASIC20.52■□□□□ 0.88
VCPP55072 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VCPP55072 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
VCPP55072 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
VCPP55072 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
VCPP55072 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
VCPP55072 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.51■□□□□ 0.87
VCPP55072 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
VCPP55072 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.51■□□□□ 0.87
VCPP55072 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.51■□□□□ 0.87
VCPP55072 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.51■□□□□ 0.87
VCPP55072 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 AL450487.1-201ENST00000426799 995 ntBASIC20.51■□□□□ 0.87
VCPP55072 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.51■□□□□ 0.87
VCPP55072 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.51■□□□□ 0.87
VCPP55072 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
VCPP55072 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.51■□□□□ 0.87
VCPP55072 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCPP55072 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.51■□□□□ 0.87
VCPP55072 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
VCPP55072 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.5■□□□□ 0.87
VCPP55072 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
VCPP55072 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.5■□□□□ 0.87
VCPP55072 ECEL1P2-202ENST00000465689 757 ntBASIC20.5■□□□□ 0.87
VCPP55072 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.5■□□□□ 0.87
VCPP55072 MYC-208ENST00000641036 567 ntBASIC20.5■□□□□ 0.87
VCPP55072 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
VCPP55072 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
VCPP55072 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCPP55072 AC005332.7-201ENST00000614046 2005 ntBASIC20.49■□□□□ 0.87
VCPP55072 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCPP55072 AC093484.2-201ENST00000580996 2166 ntBASIC20.49■□□□□ 0.87
VCPP55072 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
VCPP55072 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCPP55072 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.49■□□□□ 0.87
VCPP55072 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
VCPP55072 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
VCPP55072 AL031133.1-201ENST00000406807 723 ntBASIC20.49■□□□□ 0.87
VCPP55072 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.49■□□□□ 0.87
VCPP55072 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.49■□□□□ 0.87
VCPP55072 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.49■□□□□ 0.87
VCPP55072 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VCPP55072 LINC01238-205ENST00000567549 1107 ntBASIC20.49■□□□□ 0.87
VCPP55072 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCPP55072 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCPP55072 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VCPP55072 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCPP55072 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.49■□□□□ 0.87
VCPP55072 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCPP55072 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
VCPP55072 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCPP55072 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.48■□□□□ 0.87
VCPP55072 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCPP55072 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCPP55072 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCPP55072 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.48■□□□□ 0.87
VCPP55072 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
VCPP55072 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCPP55072 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.48■□□□□ 0.87
VCPP55072 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms