Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COPAP53621 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.78■□□□□ 0.76
COPAP53621 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 B3GAT3P1-201ENST00000471720 806 ntBASIC19.78■□□□□ 0.76
COPAP53621 NAPSB-206ENST00000562112 1266 ntBASIC19.78■□□□□ 0.76
COPAP53621 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.78■□□□□ 0.76
COPAP53621 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.78■□□□□ 0.76
COPAP53621 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COPAP53621 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COPAP53621 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COPAP53621 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COPAP53621 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.77■□□□□ 0.76
COPAP53621 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.77■□□□□ 0.76
COPAP53621 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
COPAP53621 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
COPAP53621 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COPAP53621 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COPAP53621 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.77■□□□□ 0.76
COPAP53621 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.77■□□□□ 0.76
COPAP53621 AC005363.2-201ENST00000618631 242 ntBASIC19.77■□□□□ 0.76
COPAP53621 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.77■□□□□ 0.76
COPAP53621 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COPAP53621 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COPAP53621 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COPAP53621 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COPAP53621 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COPAP53621 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
COPAP53621 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.77■□□□□ 0.76
COPAP53621 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.77■□□□□ 0.75
COPAP53621 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.77■□□□□ 0.75
COPAP53621 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
COPAP53621 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COPAP53621 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
COPAP53621 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.76■□□□□ 0.75
COPAP53621 BX119927.1-201ENST00000636596 1552 ntBASIC19.76■□□□□ 0.75
COPAP53621 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.76■□□□□ 0.75
COPAP53621 AC011506.1-201ENST00000474329 610 ntBASIC19.76■□□□□ 0.75
COPAP53621 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.76■□□□□ 0.75
COPAP53621 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.76■□□□□ 0.75
COPAP53621 AC092865.7-201ENST00000641832 219 ntBASIC19.76■□□□□ 0.75
COPAP53621 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
COPAP53621 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COPAP53621 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COPAP53621 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COPAP53621 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COPAP53621 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COPAP53621 TNXA-203ENST00000507684 2038 ntBASIC19.75■□□□□ 0.75
COPAP53621 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.75■□□□□ 0.75
COPAP53621 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COPAP53621 AC005521.1-201ENST00000393351 872 ntBASIC19.75■□□□□ 0.75
COPAP53621 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.75■□□□□ 0.75
COPAP53621 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.75■□□□□ 0.75
COPAP53621 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.75■□□□□ 0.75
COPAP53621 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.75■□□□□ 0.75
COPAP53621 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.75■□□□□ 0.75
COPAP53621 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.75■□□□□ 0.75
COPAP53621 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
COPAP53621 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COPAP53621 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
COPAP53621 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.74■□□□□ 0.75
COPAP53621 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COPAP53621 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COPAP53621 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 AC113347.1-201ENST00000413321 391 ntBASIC19.74■□□□□ 0.75
COPAP53621 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.74■□□□□ 0.75
COPAP53621 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.74■□□□□ 0.75
COPAP53621 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COPAP53621 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COPAP53621 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.74■□□□□ 0.75
COPAP53621 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms